PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa004841

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

CAMTA

Protein Properties

Length: 863aa MW: 98491.6 Da PI: 6.8443

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Lsa#S58695854	PU_ref	Unigene	View CDS
PUT-187a-Lactuca_sativa-33710	PU_unref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	162.5	7.8e-51	28	145	2	118
CG-1 2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcyw 100 ++e k+rwl+++ei+a+L n+++++++ ++ + p+sg+++L++rk++r+frkDG++wkkkkdgktv+E+he+LKvg+ e +++yYah+e+ +tf rrcyw Lsa004841 28 MEEaKTRWLRPNEIHAVLYNHKHFSISVKPVNLPSSGTIVLFDRKMLRNFRKDGHNWKKKKDGKTVKEAHEHLKVGNNERIHVYYAHGEDRSTFVRRCYW 127 55669********************************************************************************************* PP CG-1 101 lLeeelekivlvhylevk 118 lL+++le+ivlvhy++++ Lsa004841 128 LLDKNLEHIVLVHYRDTQ 145 *************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	73.717	24	150	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	2.2E-74	27	145	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	9.3E-46	30	143	IPR005559	CG-1 DNA-binding domain
SuperFamily	SSF81296	3.55E-12	307	393	IPR014756	Immunoglobulin E-set
CDD	cd00204	4.91E-14	490	605	No hit	No description
Gene3D	G3DSA:1.25.40.20	5.3E-15	493	608	IPR020683	Ankyrin repeat-containing domain
SuperFamily	SSF48403	1.35E-15	494	608	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50297	15.194	504	608	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50088	11.434	546	578	IPR002110	Ankyrin repeat
SMART	SM00248	2.8E-4	546	575	IPR002110	Ankyrin repeat
Pfam	PF13637	2.6E-6	548	605	No hit	No description
SMART	SM00248	480	585	614	IPR002110	Ankyrin repeat
SuperFamily	SSF52540	3.45E-8	619	766	IPR027417	P-loop containing nucleoside triphosphate hydrolase
SMART	SM00015	27	715	737	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	7.474	716	742	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	0.046	718	736	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	0.46	738	760	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	10.017	739	763	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	0.0065	740	759	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	8.7	816	838	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	8.334	818	846	IPR000048	IQ motif, EF-hand binding site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 863 aa Download sequence Send to blast
MEPAVSGLVG SEIHGFKTME DLDVPNMMEE AKTRWLRPNE IHAVLYNHKH FSISVKPVNL 60 PSSGTIVLFD RKMLRNFRKD GHNWKKKKDG KTVKEAHEHL KVGNNERIHV YYAHGEDRST 120 FVRRCYWLLD KNLEHIVLVH YRDTQELQGS PGLTVDSNSS SDPPTSSNLS EEIDGVDQVY 180 FTEPNETAIN HEMRIHEINT LEWDELVIPT SDKLSGSEGG NVAQFDQTNQ YISNGSFDNV 240 SRQNAQIANL GIDVLNTMHK DGLPTQESFG RWMNYIITDS PGSIDDPLQH PFTPFNGDNN 300 STDKIFNITD VSPSWALTNE ETKILVVGDF NKKYIHLMNS NIFCVCGDAF VQLEFVQSGV 360 FRCMIPPQNP GIVNLFLSSD CHNPISQVME FEFRPPPPPP ATNLPTPVNE KPDWQELEIN 420 MRLAHLLFST SKSLEILSSK IPQKTLKDAI IFAQKTRHIV NSWDFLVKSI MEKRVPFERA 480 RNSLMELTLQ NRLLEWLLER VLEGGKLPVR DDEGQGVIHL CAILDYNWAI YPYSWSGLSL 540 DFRDKFGWTA LHWAAHHGRQ RMVASLLSVG ANPNLVTDPT SENPSGCTPA DLASKNGYEG 600 LAAYLAEKAL VAHFEAMTLA GNVSGSLQST FPTNEPVVPD TSSILVSEEE QYLKDTLAAY 660 RTAADAAARI QAAFREQSFK LKTKEVEVSN PEDEARCIIA AMRIQHAFRN HESKKQMAAA 720 VRIQYRFRTW KIRKDFLNKR RQAIRIQAIF RGHQVRRQYT KIVWSVGVLE KAILRWRLKR 780 KGFRGLQVDA DKDEKQENVD GEEGFFHASR KQAEERVERS VVRVQAMFRS KLAQEEYRKM 840 KLQHIQASIE YNESFDPPTD MEK

Sequence ? help Back to Top

Protein Sequence Length: 863 aa Download sequence Send to blast

MEPAVSGLVG SEIHGFKTME DLDVPNMMEE AKTRWLRPNE IHAVLYNHKH FSISVKPVNL  60
PSSGTIVLFD RKMLRNFRKD GHNWKKKKDG KTVKEAHEHL KVGNNERIHV YYAHGEDRST  120
FVRRCYWLLD KNLEHIVLVH YRDTQELQGS PGLTVDSNSS SDPPTSSNLS EEIDGVDQVY  180
FTEPNETAIN HEMRIHEINT LEWDELVIPT SDKLSGSEGG NVAQFDQTNQ YISNGSFDNV  240
SRQNAQIANL GIDVLNTMHK DGLPTQESFG RWMNYIITDS PGSIDDPLQH PFTPFNGDNN  300
STDKIFNITD VSPSWALTNE ETKILVVGDF NKKYIHLMNS NIFCVCGDAF VQLEFVQSGV  360
FRCMIPPQNP GIVNLFLSSD CHNPISQVME FEFRPPPPPP ATNLPTPVNE KPDWQELEIN  420
MRLAHLLFST SKSLEILSSK IPQKTLKDAI IFAQKTRHIV NSWDFLVKSI MEKRVPFERA  480
RNSLMELTLQ NRLLEWLLER VLEGGKLPVR DDEGQGVIHL CAILDYNWAI YPYSWSGLSL  540
DFRDKFGWTA LHWAAHHGRQ RMVASLLSVG ANPNLVTDPT SENPSGCTPA DLASKNGYEG  600
LAAYLAEKAL VAHFEAMTLA GNVSGSLQST FPTNEPVVPD TSSILVSEEE QYLKDTLAAY  660
RTAADAAARI QAAFREQSFK LKTKEVEVSN PEDEARCIIA AMRIQHAFRN HESKKQMAAA  720
VRIQYRFRTW KIRKDFLNKR RQAIRIQAIF RGHQVRRQYT KIVWSVGVLE KAILRWRLKR  780
KGFRGLQVDA DKDEKQENVD GEEGFFHASR KQAEERVERS VVRVQAMFRS KLAQEEYRKM  840
KLQHIQASIE YNESFDPPTD MEK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator (PubMed:14581622). Binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in response to cold. Contributes together with CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). {ECO:0000250\|UniProtKB:Q8GSA7, ECO:0000269\|PubMed:14581622, ECO:0000269\|PubMed:28351986, ECO:0000305\|PubMed:11925432}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat shock, UVB, wounding, abscisic acid, H(2)O(2) and salicylic acid. {ECO:0000269\|PubMed:12218065}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023732295.1	0.0	calmodulin-binding transcription activator 6-like
Refseq	XP_023732296.1	0.0	calmodulin-binding transcription activator 6-like
Refseq	XP_023732297.1	0.0	calmodulin-binding transcription activator 6-like
Refseq	XP_023732298.1	0.0	calmodulin-binding transcription activator 6-like
Refseq	XP_023732299.1	0.0	calmodulin-binding transcription activator 6-like
Swissprot	O23463	0.0	CMTA5_ARATH; Calmodulin-binding transcription activator 5
TrEMBL	A0A2J6KIY4	0.0	A0A2J6KIY4_LACSA; Uncharacterized protein
STRING	XP_009609050.1	0.0	(Nicotiana tomentosiformis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G16940.1	0.0	calmodulin binding;transcription regulators

Publications ? help Back to Top
Ye J, et al. Arabidopsis formin3 directs the formation of actin cables and polarized growth in pollen tubes. Plant Cell, 2009. 21(12): p. 3868-84 [PMID:20023198] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986] Lan Y,Liu X,Fu Y,Huang S Arabidopsis class I formins control membrane-originated actin polymerization at pollen tube tips. PLoS Genet., 2018. 14(11): p. e1007789 [PMID:30418966]