PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa004945

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

TCP

Protein Properties

Length: 544aa MW: 58924.6 Da PI: 7.3154

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Lsa#S58692146	PU_ref	Unigene	View CDS
PUT-187a-Lactuca_sativa-2926	PU_unref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	104.8	1.4e-32	134	265	3	106
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg............. 88 + k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa++ai+++tgt++++a+++ ++s +s++s+ s++ Lsa004945 134 PPKRSTKDRHTKVDGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAETAIIAATGTGTIPANFStLNVSLRSTGSTLSAPpsksaphqfhgal 233 5699****************************************************************99987888888888555556666778887777 PP TCP 89 ................kaaksaa.kskksqksaas 106 +++ +++++q+++++ Lsa004945 234 alahhpfdqegfsqmmG---FHQhHHQQQQQQHHH 265 77777777655543221...111111111111111 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	2.9E-40	138	269	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	28.008	139	193	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 544 aa Download sequence Send to blast
MERTDLQSNN KQSSTTTPTS NTSSSHHHHH HHLSHHLHHQ PMVVPFDARS VTPFMGSISI 60 QPGPANTPTT TSGASSSLSS PSNQHPTTAS TSSATQLSPP HPHLVDASLA IATRSEALTD 120 LAKENPQPVA VVPPPKRSTK DRHTKVDGRG RRIRMPATCA ARVFQLTREL GHKSDGETIE 180 WLLQQAETAI IAATGTGTIP ANFSTLNVSL RSTGSTLSAP PSKSAPHQFH GALALAHHPF 240 DQEGFSQMMG FHQHHHQQQQ QQHHHHQNPH ILTADQIADA ISTGGNGGTG GDSTDNYMRK 300 RYREDLFKDE SNQNQGEVTV GSTSPSNKQF KGAMEMPKQQ QEAGGPSSGN NILRHHANMM 360 PATAMWAVAP APTTATGNTL WMLPVSTSVS SSSGQHSHLA GAASESQHHH HQQMWPFPTA 420 QAVGGGNTLQ APLHFIPRIN IPAANLEFQQ NSRANPLQLG SMLMQQQQQQ QQQQQQQPSQ 480 HLGLGMSESN LGMLAALNAY SRGGLNMNSD QNHPLDHHHH PNQNQNQHHS QTTDSGDEDQ 540 NDST

Sequence ? help Back to Top

Protein Sequence Length: 544 aa Download sequence Send to blast

MERTDLQSNN KQSSTTTPTS NTSSSHHHHH HHLSHHLHHQ PMVVPFDARS VTPFMGSISI  60
QPGPANTPTT TSGASSSLSS PSNQHPTTAS TSSATQLSPP HPHLVDASLA IATRSEALTD  120
LAKENPQPVA VVPPPKRSTK DRHTKVDGRG RRIRMPATCA ARVFQLTREL GHKSDGETIE  180
WLLQQAETAI IAATGTGTIP ANFSTLNVSL RSTGSTLSAP PSKSAPHQFH GALALAHHPF  240
DQEGFSQMMG FHQHHHQQQQ QQHHHHQNPH ILTADQIADA ISTGGNGGTG GDSTDNYMRK  300
RYREDLFKDE SNQNQGEVTV GSTSPSNKQF KGAMEMPKQQ QEAGGPSSGN NILRHHANMM  360
PATAMWAVAP APTTATGNTL WMLPVSTSVS SSSGQHSHLA GAASESQHHH HQQMWPFPTA  420
QAVGGGNTLQ APLHFIPRIN IPAANLEFQQ NSRANPLQLG SMLMQQQQQQ QQQQQQQPSQ  480
HLGLGMSESN LGMLAALNAY SRGGLNMNSD QNHPLDHHHH PNQNQNQHHS QTTDSGDEDQ  540
NDST

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023730292.1	0.0	transcription factor TCP8-like
Refseq	XP_023730293.1	0.0	transcription factor TCP8-like
TrEMBL	A0A2J6KNN1	0.0	A0A2J6KNN1_LACSA; Uncharacterized protein
STRING	EOX97160	1e-156	(Theobroma cacao)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G58100.1	2e-70	TCP family protein