PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa004969

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

NF-YA

Protein Properties

Length: 256aa MW: 28871.5 Da PI: 9.8886

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Lsa#S58679251	PU_ref	Unigene	View CDS
PUT-187a-Lactuca_sativa-3421	PU_unref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	100.4	1.8e-31	168	224	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep++VNaKQy++Il+RRq Rak+e+e+k +ksrkpylheSRh hAlrR Rg+gGrF Lsa004969 168 EEPVFVNAKQYHGILRRRQCRAKAESEHKA-NKSRKPYLHESRHLHALRRSRGCGGRF 224 69**************************.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	1.2E-33	166	227	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	35.135	167	227	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	3.6E-27	169	224	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	5.6E-23	170	192	IPR001289	Nuclear transcription factor Y subunit A
PROSITE pattern	PS00686	0	172	192	IPR018362	CCAAT-binding factor, conserved site
PRINTS	PR00616	5.6E-23	201	224	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0016602	Cellular Component	CCAAT-binding factor complex
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 256 aa Download sequence Send to blast
XSGETVTRAE LVHNIPXAKR QLSHQGHRIK QTQKRKTSNI NLSFKLLTEN QVHQNCGSHS 60 IMSSSAPEFS DNSESEMQQS QMEGQIQCSS SPATTTTTGT SHPSNIQYPT LGQAAYPFPD 120 PYYRGTNIFN PYETQSYPAQ PYPGQPMVHL QFMGIQQAGV PLPSDTVEEP VFVNAKQYHG 180 ILRRRQCRAK AESEHKANKS RKPYLHESRH LHALRRSRGC GGRFEKKDKQ QKEKGSNDNN 240 PQSQSQMNIN LNSDKT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	2e-19	167	224	1	58	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023734088.1	1e-145	nuclear transcription factor Y subunit A-7-like isoform X2
Swissprot	Q84JP1	2e-53	NFYA7_ARATH; Nuclear transcription factor Y subunit A-7
TrEMBL	A0A2J6MCI0	1e-129	A0A2J6MCI0_LACSA; Uncharacterized protein
STRING	VIT_10s0003g04650.t01	1e-79	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G30500.2	1e-52	nuclear factor Y, subunit A7

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]