PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa005032
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family bHLH
Protein Properties Length: 382aa    MW: 39651.8 Da    PI: 5.9634
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-187a-Lactuca_sativa-20613PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.35e-12204249555
                HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                h+++Er RR+ri +++  L+el+P+a      K +Ka++L + ++Y+k Lq
  Lsa005032 204 HSIAERLRRERIAERMKALQELVPNA-----NKTDKASMLDEIIDYVKFLQ 249
                99***********************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.11E-13197253No hitNo description
SuperFamilySSF474595.89E-17197258IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.39199248IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.4E-16201258IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.4E-9204249IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-13205254IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MQESQMSLQD LQNDTNGFDQ TVTHDDFLDQ MLSGLQTTVS WPDISAANGG GGQNKSTLPW  60
DVDHFDDQSA FLSSKLRQHQ ITAAGGARTP SSAAKSLQLS RGLAPSGESG LFQNDNIDDS  120
SFKSPIGDNN SIQNLFHGFT GSLTSNQTQP FRNLPVQNFG SPGAAAAAAV MSQVQTASAT  180
PGGGAPSQPR QRVRARRGQA TDPHSIAERL RRERIAERMK ALQELVPNAN KTDKASMLDE  240
IIDYVKFLQL QVKVLSMSRL GGAGGGNGGG GVAPIVAESG GAGRSSNGTT SSSNNETMAV  300
TENQVVKLME EDMGSAMQYL QGKGLCLMPI SLATAISTAT CGTRSNHPLG GGGGGEGGGP  360
SSPNMSVLTV QSANGASVKD SP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1208213RLRRER
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold, UV, ethylene (ACC), flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269|PubMed:12679534}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023760230.10.0transcription factor bHLH69-like
SwissprotQ9ZUG99e-83BH066_ARATH; Transcription factor bHLH66
TrEMBLA0A2J6LM230.0A0A2J6LM23_LACSA; Uncharacterized protein
STRINGEOY295791e-116(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24260.12e-61LJRHL1-like 1
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Zhang J, et al.
    Sperm cells are passive cargo of the pollen tube in plant fertilization.
    Nat Plants, 2017. 3: p. 17079
    [PMID:28585562]