PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa005096
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family MYB
Protein Properties Length: 244aa    MW: 27690.1 Da    PI: 6.1537
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58684638PU_refUnigeneView CDS
PUT-187a-Lactuca_sativa-24293PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding537.6e-171461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd +l+d++++ G gtW++ ++  g++R++k+c++rw +yl
        Lsa005096 14 KGAWTPEEDRILLDYITKNGHGTWRSFPKLAGLRRCGKSCRLRWTNYL 61
                     79********************************************97 PP
2Myb_DNA-binding543.7e-1767112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++T eE++ + +++++lG++ W++Ia++++ gRt++++k++w+++l
        Lsa005096  67 RGAFTFEEEQTIFQLHTLLGNK-WAAIASRLP-GRTDNEIKNYWNSHL 112
                      89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.4E-24564IPR009057Homeodomain-like
PROSITE profilePS5129416.608961IPR017930Myb domain
SuperFamilySSF466894.31E-2912108IPR009057Homeodomain-like
SMARTSM007178.7E-111363IPR001005SANT/Myb domain
PfamPF002493.3E-141461IPR001005SANT/Myb domain
CDDcd001672.70E-81661No hitNo description
PROSITE profilePS5129425.05462116IPR017930Myb domain
Gene3DG3DSA:1.10.10.609.1E-2665115IPR009057Homeodomain-like
SMARTSM007177.1E-1666114IPR001005SANT/Myb domain
PfamPF002491.6E-1567112IPR001005SANT/Myb domain
CDDcd001677.20E-1169112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MGRLPCCDKG EVKKGAWTPE EDRILLDYIT KNGHGTWRSF PKLAGLRRCG KSCRLRWTNY  60
LRPDIKRGAF TFEEEQTIFQ LHTLLGNKWA AIASRLPGRT DNEIKNYWNS HLRKRIPNLQ  120
AKSDSMSAED IKPKLLSTSH MAEWESARVE AMDPIVTGGG DCDYFMKAWN SVGGDAFQRG  180
KESESMIKVE SESVITMQAE EGTNSNSYSP NSYKTEKSSD ITLDLLLDFP NEGEYLEYLN  240
DNSA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-291111624128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may play a role in flower development by repressing ANT (PubMed:19232308). Regulates the transition of meristem identity from vegetative growth to flowering. Acts downstream of LFY and upstream of AP1. Directly activates AP1 to promote floral fate. Together with LFY and AP1 may constitute a regulatory network that contributes to an abrupt and robust meristem identity transition (PubMed:21750030). {ECO:0000269|PubMed:19232308, ECO:0000269|PubMed:21750030}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023752439.10.0transcription factor MYB41-like
SwissprotQ9M2D94e-80MYB17_ARATH; Transcription factor MYB17
TrEMBLA0A2J6M3M41e-147A0A2J6M3M4_LACSA; Uncharacterized protein
STRINGVIT_16s0050g00070.t017e-81(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61250.12e-82myb domain protein 17