PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa005107
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family Trihelix
Protein Properties Length: 370aa    MW: 42052.4 Da    PI: 4.341
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-187a-Lactuca_sativa-11615PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix50.84.3e-16149233286
   trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                W+++e+ +L++a  e+  + +r++l+   W+ev++++ +e ++er+  qC+++++ l+k+ykk+k++  + + ++ ++++yf++++
  Lsa005107 149 WSEHETFVLLDAWGERFLQCGRKSLRSEEWQEVADRVsQESKIERTDSQCRNRLDTLKKKYKKEKASLTG-SRGVNTKWVYFKKMD 233
                *************************************88999***************************8.588889********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138376.5E-23148235No hitNo description
PROSITE profilePS500906.353149206IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.606.8E-4149215IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MADTQEDSKY RPNYGLNQGF TQSQIVGKYA DEDDDEAEED DEEQEHEQEE TDVGDNEMNG  60
TSTQQNGNDN DHHHQYDDDD EDDDNDDDDD DDGDDNTRRM TSVNLQRHPK KRKLKSLLSS  120
FEFSPRVAPP SSVAPPKPSF GGRNTLTDWS EHETFVLLDA WGERFLQCGR KSLRSEEWQE  180
VADRVSQESK IERTDSQCRN RLDTLKKKYK KEKASLTGSR GVNTKWVYFK KMDMLLSGEN  240
AYMNPNDNLN PANGVDDMRD SGGNSDSQEG DDDSDLLPPK KLKFKGGGGG GGGGSFRLLA  300
ESINKFSEIY EKIENGKIQQ MIELEKMRMD FHKDLEMQKR KILDRAQAEI TKVRQGDYEE  360
NDGSAENVSG
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023730405.10.0trihelix transcription factor ASIL2-like
TrEMBLA0A2J6KN420.0A0A2J6KN42_LACSA; Uncharacterized protein
STRINGPGSC0003DMT4000805931e-118(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24490.16e-49Trihelix family protein