PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa005206

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

NAC

Protein Properties

Length: 171aa MW: 19938.7 Da PI: 9.6368

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Lsa#S58668877	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	139.2	2.6e-43	9	141	2	127
NAM 2 ppGfrFhPtdeelvveyLkkkvegkk...leleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 +pGfrF Pt+eel+++yLk+k++g++ ++++vi+++++y++ PwdLp+ +++++ ++w+fF++r++k+a+g r++r t+sgyWkatg+ v+s Lsa005206 9 APGFRFYPTEEELITFYLKHKIQGTTrllQHIDRVIPRLHVYDFYPWDLPQyageRCQGDLEQWFFFIPRQEKEARGGRPSRLTSSGYWKATGSPSIVYS 108 59*********************9997777789***********646665566777********************************** PP NAM 95 kkgelvglkktLvfykgrapkgektdWvmheyr 127 +++++g+k+t+vfy+grap+g+kt+W m+ey+ Lsa005206 109 WNNRAIGIKRTMVFYNGRAPSGTKTKWKMNEYK 141 ******************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	46.477	8	169	IPR003441	NAC domain
SuperFamily	SSF101941	1.83E-47	8	169	IPR003441	NAC domain
Pfam	PF02365	5.5E-23	10	141	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 171 aa Download sequence Send to blast
MEGEGVVGAP GFRFYPTEEE LITFYLKHKI QGTTRLLQHI DRVIPRLHVY DFYPWDLPQY 60 AGERCQGDLE QWFFFIPRQE KEARGGRPSR LTSSGYWKAT GSPSIVYSWN NRAIGIKRTM 120 VFYNGRAPSG TKTKWKMNEY KAFQEVPSSN SNPRPELMEE LSLCRVYVKS N

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-35	10	171	19	167	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-35	10	171	19	167	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-35	10	171	19	167	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-35	10	171	19	167	NO APICAL MERISTEM PROTEIN
3swm_A	2e-35	10	171	22	170	NAC domain-containing protein 19
3swm_B	2e-35	10	171	22	170	NAC domain-containing protein 19
3swm_C	2e-35	10	171	22	170	NAC domain-containing protein 19
3swm_D	2e-35	10	171	22	170	NAC domain-containing protein 19
3swp_A	2e-35	10	171	22	170	NAC domain-containing protein 19
3swp_B	2e-35	10	171	22	170	NAC domain-containing protein 19
3swp_C	2e-35	10	171	22	170	NAC domain-containing protein 19
3swp_D	2e-35	10	171	22	170	NAC domain-containing protein 19
4dul_A	2e-35	10	171	19	167	NAC domain-containing protein 19
4dul_B	2e-35	10	171	19	167	NAC domain-containing protein 19
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023772343.1	1e-126	NAC domain-containing protein 90-like isoform X2
Swissprot	Q9FMR3	6e-66	NAC90_ARATH; NAC domain-containing protein 90
TrEMBL	A0A2J6KUS6	1e-125	A0A2J6KUS6_LACSA; Uncharacterized protein
STRING	XP_008243510.1	6e-73	(Prunus mume)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22380.1	2e-68	NAC domain containing protein 90

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]