PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa005217
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family MYB
Protein Properties Length: 210aa    MW: 23717.8 Da    PI: 5.6092
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S29955672PU_refUnigeneView CDS
PUT-187a-Lactuca_sativa-24922PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.45.1e-111055345
                     SS-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrwq 45
                      WT e d  + +a  +++ +    +W++Ia+ ++ g+t +++k+++ 
        Lsa005217 10 TWTREQDRAFENALVEYPDEdsddRWEKIAADVP-GKTVEEIKHHYE 55
                     7*****************99**************.**********96 PP
2Myb_DNA-binding43.76.3e-14117161347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +W+++E+ l++ + +++G+g+W++I+r +  +Rt+ q+ s+ qky
        Lsa005217 117 AWSEDEHRLFLLGLEKYGKGDWRSISRNFVVTRTPTQVASHAQKY 161
                      7*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512937.391662IPR017884SANT domain
SMARTSM007171.2E-9760IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-51056IPR009057Homeodomain-like
PfamPF002499.3E-91055IPR001005SANT/Myb domain
CDDcd001672.62E-91058No hitNo description
SuperFamilySSF466891.86E-101165IPR009057Homeodomain-like
PROSITE profilePS5129417.825110166IPR017930Myb domain
SuperFamilySSF466891.87E-16112167IPR009057Homeodomain-like
TIGRFAMsTIGR015572.0E-17114164IPR006447Myb domain, plants
SMARTSM007171.0E-11114164IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.0E-11115160IPR009057Homeodomain-like
CDDcd001675.76E-10117162No hitNo description
PfamPF002495.5E-12117161IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MEDEIARDST WTREQDRAFE NALVEYPDED SDDRWEKIAA DVPGKTVEEI KHHYELLVDD  60
LDRIESGIVP LPCYSSSSED SATHGGDDGN SKKGGNSESV HGVKSSKSDQ ERRKGVAWSE  120
DEHRLFLLGL EKYGKGDWRS ISRNFVVTRT PTQVASHAQK YFIRLNSMNR ERRRTSIHDI  180
TSVNNGDGAA ITGQTMVLRQ VVKQHSPLVX
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A8e-1711831182RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023736472.11e-143transcription factor SRM1-like
RefseqXP_023736473.11e-143transcription factor SRM1-like
SwissprotQ9FNN64e-90SRM1_ARATH; Transcription factor SRM1
TrEMBLA0A2J6K9B61e-142A0A2J6K9B6_LACSA; Uncharacterized protein
STRINGXP_008221083.11e-105(Prunus mume)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.14e-85MYB family protein
Publications ? help Back to Top
  1. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  2. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]