PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa005287

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

bHLH

Protein Properties

Length: 267aa MW: 30158.6 Da PI: 5.6528

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-187a-Lactuca_sativa-3880	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	25.1	3.2e-08	40	89	1	54
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r++ + rE+ RRd++N+ f eL ll ++ +K++K++i +++ +k+L Lsa005287 40 RKVQKADREKLRRDKLNEQFIELGHLLDPD----RPKNDKSSIIIDTIQILKDL 89 5677889****************99997....79************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.11E-12	36	107	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.3E-10	38	109	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	12.417	39	89	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.16E-6	40	93	No hit	No description
Pfam	PF00010	4.5E-6	40	89	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.6E-4	45	95	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 267 aa Download sequence Send to blast
MDQWNAKLEL HQQQYQHISN SHSDQRETAE VEVKDTSDAR KVQKADREKL RRDKLNEQFI 60 ELGHLLDPDR PKNDKSSIII DTIQILKDLT NEVNRLKAEC SALSEESCEL IQEKNELREE 120 KSSLKSDIEN LNTQYQQRVG VMYPWGGIDP SSVVMPPPFS YPVALPVPAG PLPIHPFPFY 180 ANHNPPGASI MPYPNPNPAN YHINNQTLPV YVSRSSKQES GNKSSEQFRG SNSNDEKGDN 240 SSDVVTDLEL KTPGSQVKRL LLPFGKS

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023733292.1	0.0	transcription factor bHLH121-like isoform X1
Refseq	XP_023733297.1	0.0	transcription factor bHLH121-like isoform X2
Swissprot	Q9LT23	5e-63	BH121_ARATH; Transcription factor bHLH121
TrEMBL	A0A2J6MCP8	0.0	A0A2J6MCP8_LACSA; Uncharacterized protein
STRING	EOX90849	2e-92	(Theobroma cacao)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19860.2	2e-55	bHLH family protein

Publications ? help Back to Top
Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470] Min JH, et al. Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element. Front Plant Sci, 2017. 8: p. 2100 [PMID:29321786]