PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa005298
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family C3H
Protein Properties Length: 256aa    MW: 27371.5 Da    PI: 5.1939
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58681611PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.52.2e-0893117126
                --S---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                +kt+lC+ f++ GtC+y  +C+FaH+
  Lsa005298  93 FKTKLCCKFRA-GTCPYITNCNFAHS 117
                69*********.*************8 PP
2zf-CCCH19.22.2e-06167192126
                --S---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                yk + C+ f+    C+yGd+C+F H+
  Lsa005298 167 YKGRHCKKFYTEEGCPYGDNCTFLHD 192
                78888********************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.102.3E-1490125IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.81E-890123IPR000571Zinc finger, CCCH-type
SMARTSM003560.003592118IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.8492119IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-593117IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.9E-8165194IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.8E-9165194IPR000571Zinc finger, CCCH-type
SMARTSM003560.058166193IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.23166194IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MDYGRESGNV VQIITGGSRN GGDYWGDQPV WATEDEYGVW DREASIDNTS NSNYDGRQSQ  60
TRSGSDTPNK KRNGQGGDAQ ATSRSKAIGK MFFKTKLCCK FRAGTCPYIT NCNFAHSIEE  120
LRRPPPNWQE IVAAHEEERA VSSEPREEFQ IPSLGSSSFT VDSQRSYKGR HCKKFYTEEG  180
CPYGDNCTFL HDEQSKARES VVISLGPGSG SGYGGAGGGS GGGAVVVVAG GGGGGGGGDA  240
FESDLQARLE RCVAEX
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023738883.11e-173LOW QUALITY PROTEIN: zinc finger CCCH domain-containing protein 56-like
SwissprotQ9LQM32e-71C3H12_ARATH; Zinc finger CCCH domain-containing protein 12
TrEMBLU5U2G41e-145U5U2G4_9ASTR; Putative zinc finger CCCH domain-containing protein 56 (Fragment)
STRINGXP_008373586.11e-107(Malus domestica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32360.18e-73C3H family protein