PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa005308
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family C2H2
Protein Properties Length: 549aa    MW: 60502 Da    PI: 8.502
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58693597PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.11.6e-0591113123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                ++C++C+k F r  nL+ H r H
  Lsa005308  91 FVCEICNKGFQRDQNLQLHRRGH 113
                89*******************88 PP
2zf-C2H212.60.00041168190123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                +kC +C+k++  +s+ k H +t+
  Lsa005308 168 WKCDKCSKRYAVQSDWKAHSKTC 190
                58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.09E-790113No hitNo description
Gene3DG3DSA:3.30.160.601.8E-590113IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.01791113IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.94991113IPR007087Zinc finger, C2H2
PROSITE patternPS00028093113IPR007087Zinc finger, C2H2
SMARTSM0035578133163IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.609.6E-5156189IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.09E-7163188No hitNo description
SMARTSM00355140168188IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 549 aa     Download sequence    Send to blast
MMMKQQKVIL EDNLSSASSD LYANTVNSCS ENKGQENGSN YHPNQQQYFA HPPPSQSQPL  60
LKKKRSLPGN PDPEAEVISL SPKTLMATNR FVCEICNKGF QRDQNLQLHR RGHNLPWKLK  120
QRNKNEVVRK KVYVCPEVNC VHHEPSRALG DLTGIKKHFS RKHGEKKWKC DKCSKRYAVQ  180
SDWKAHSKTC GTREYRCDCG TLFSRRDSFI THRAFCDALA EESARAITGI DPSIPGQIPT  240
RFNDLHLLNP IHNTFLKKEE HPFPWLQTQP QSQEKDCSPS SISHGGSGPN LTAYHPAPSA  300
YMSATALLQK AAQMGTSHLS NRSTSIQAQC TTSTSMLKPH HQHQHHHQQY RAHVSTNSAT  360
IGNNNGCTSA STGLLMSSLD PEEMMALASF GNVKDGACAG GPSPSPSTSP SPHPTPPLPL  420
PLPHHPHTSP SFLHPMNMSM NMSMSMMMNP DGFADVSTFE DAFSQIMDAK KEDHDHDRDL  480
HGDLVESHPS DSSKLHHGQM MAMNDAKSNG NGGNIGGGVM GNEGMTRDFL GLKAPSHGHG  540
GILKHKPNP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C3e-35164225364Zinc finger protein JACKDAW
5b3h_F3e-35164225364Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1119130KQRNKNEVVRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023740966.10.0protein indeterminate-domain 7-like
SwissprotQ8H1F51e-111IDD7_ARATH; Protein indeterminate-domain 7
TrEMBLA0A2J6JZS20.0A0A2J6JZS2_LACSA; Uncharacterized protein
STRINGGorai.011G064700.11e-134(Gossypium raimondii)
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]