PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa005318

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

C2H2

Protein Properties

Length: 421aa MW: 45491.4 Da PI: 9.493

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-187a-Lactuca_sativa-44422	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.5	1.2e-05	188	210	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +C+ Cg++F+ ++L++H+ H Lsa005318 188 VCSECGEVFPKMESLEHHQAIkH 210 8******************9877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE pattern	PS00028	0	187	210	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	9.203	187	215	IPR007087	Zinc finger, C2H2
SuperFamily	SSF56399	3.84E-26	212	418	No hit	No description
Gene3D	G3DSA:3.90.228.10	4.5E-13	222	418	IPR012317	Poly(ADP-ribose) polymerase, catalytic domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003950	Molecular Function	NAD+ ADP-ribosyltransferase activity
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 421 aa Download sequence Send to blast
MAVLTPHPSE THKVQPTKRR RQHHPQNPKL KHQHSSSPSS SSSSSSWDQI KNLLKCKQMD 60 VSGSDQKIQQ DASRNTNGYS KLSSCGSICS FKDVANGNTR VVHRADNSPE SSSVGQESGL 120 LRRKKHLSNG ASSSSSTRSV TGSVRSNGQG GYTSSSRGMQ LRKLSGCYEC HAIVDPARQA 180 IPRSTICVCS ECGEVFPKME SLEHHQAIKH AVSELGLEDS GRNIVEIIFK SSWQNKEHPI 240 FKIERILKVN NTRRTIQRFE DCRDTIKIRA TATATASRCA ADGNELLRFH CTTLACSLGS 300 HGSSSLCGSV PGCGVCTIIR HGFQNPKSGE AGKKGVCTTA SSGKAHDSLG VGARGLRAML 360 VCRVIAGKVK RVVGNAPPEE DGAYDSMAGY PGSYSNIEEL YVCNPRAILP CFVVIYKAME 420 S

Sequence ? help Back to Top

Protein Sequence Length: 421 aa Download sequence Send to blast

MAVLTPHPSE THKVQPTKRR RQHHPQNPKL KHQHSSSPSS SSSSSSWDQI KNLLKCKQMD  60
VSGSDQKIQQ DASRNTNGYS KLSSCGSICS FKDVANGNTR VVHRADNSPE SSSVGQESGL  120
LRRKKHLSNG ASSSSSTRSV TGSVRSNGQG GYTSSSRGMQ LRKLSGCYEC HAIVDPARQA  180
IPRSTICVCS ECGEVFPKME SLEHHQAIKH AVSELGLEDS GRNIVEIIFK SSWQNKEHPI  240
FKIERILKVN NTRRTIQRFE DCRDTIKIRA TATATASRCA ADGNELLRFH CTTLACSLGS  300
HGSSSLCGSV PGCGVCTIIR HGFQNPKSGE AGKKGVCTTA SSGKAHDSLG VGARGLRAML  360
VCRVIAGKVK RVVGNAPPEE DGAYDSMAGY PGSYSNIEEL YVCNPRAILP CFVVIYKAME  420
S

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024985431.1	0.0	uncharacterized protein LOC112521034
TrEMBL	A0A124SBE3	0.0	A0A124SBE3_CYNCS; Uncharacterized protein
STRING	XP_006473648.1	0.0	(Citrus sinensis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75710.1	1e-120	C2H2-like zinc finger protein