PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa005319

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

NAC

Protein Properties

Length: 265aa MW: 30718.2 Da PI: 8.9537

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Lsa#S58673160	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	159.8	1e-49	39	164	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvg 101 +pGfrFhPt+eelv +yL++kvegk++++ e i+ +d+y+++Pw+Lp+ ++ +ekew+f+++rd+ky++g+r+nr+t+sgyWkatg d+ + + + + +g Lsa005319 39 MPGFRFHPTEEELVEFYLRRKVEGKRFNV-ELITFLDLYRYDPWELPALAAIGEKEWFFYVPRDRKYRNGDRPNRVTTSGYWKATGADRMIRTDNFRSIG 137 79*************************.89***********8778899***********************************999 PP NAM 102 lkktLvfykgrapkgektdWvmheyrl 128 lkktLvfy+g+apkg +t+W+m+eyrl Lsa005319 138 LKKTLVFYSGKAPKGIRTSWIMNEYRL 164 ***********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	55.408	38	185	IPR003441	NAC domain
SuperFamily	SSF101941	1.7E-55	38	184	IPR003441	NAC domain
Pfam	PF02365	3.5E-25	40	164	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 265 aa Download sequence Send to blast
XISQRFMAIG ARTMNQEEEI RNKKQQEDDD DDHENDMVMP GFRFHPTEEE LVEFYLRRKV 60 EGKRFNVELI TFLDLYRYDP WELPALAAIG EKEWFFYVPR DRKYRNGDRP NRVTTSGYWK 120 ATGADRMIRT DNFRSIGLKK TLVFYSGKAP KGIRTSWIMN EYRLPQHETE RLQKAEISLC 180 RVYKRAGVED HPCLPRTLPT TRASIFSARA SNADKKQHSK NLLSFQSSLE QQQGQSSNQQ 240 NDEKLSETSG SSTTDIVGTA LGLSS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	3e-56	40	185	19	165	NO APICAL MERISTEM PROTEIN
1ut4_B	3e-56	40	185	19	165	NO APICAL MERISTEM PROTEIN
1ut7_A	3e-56	40	185	19	165	NO APICAL MERISTEM PROTEIN
1ut7_B	3e-56	40	185	19	165	NO APICAL MERISTEM PROTEIN
3swm_A	3e-56	40	185	22	168	NAC domain-containing protein 19
3swm_B	3e-56	40	185	22	168	NAC domain-containing protein 19
3swm_C	3e-56	40	185	22	168	NAC domain-containing protein 19
3swm_D	3e-56	40	185	22	168	NAC domain-containing protein 19
3swp_A	3e-56	40	185	22	168	NAC domain-containing protein 19
3swp_B	3e-56	40	185	22	168	NAC domain-containing protein 19
3swp_C	3e-56	40	185	22	168	NAC domain-containing protein 19
3swp_D	3e-56	40	185	22	168	NAC domain-containing protein 19
4dul_A	3e-56	40	185	19	165	NAC domain-containing protein 19
4dul_B	3e-56	40	185	19	165	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that acts as a floral repressor. Controls flowering time by negatively regulating CONSTANS (CO) expression in a GIGANTEA (GI)-independent manner. Regulates the plant cold response by positive regulation of the cold response genes COR15A and KIN1. May coordinate cold response and flowering time. {ECO:0000269\|PubMed:17653269}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Circadian regulation with a peak of expression at dawn under continuous light conditions (PubMed:17653269). Circadian regulation with a peak of expression around dusk and lowest expression around dawn under continuous light conditions (at protein level) (PubMed:17653269). {ECO:0000269\|PubMed:17653269}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023757304.1	0.0	NAC domain-containing protein 35-like
Swissprot	Q9ZVP8	1e-111	NAC35_ARATH; NAC domain-containing protein 35
TrEMBL	A0A2J6LSG7	1e-162	A0A2J6LSG7_LACSA; Uncharacterized protein
STRING	XP_009626107.1	1e-132	(Nicotiana tomentosiformis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02450.2	1e-112	NAC domain containing protein 35

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Okajima K Molecular mechanism of phototropin light signaling. J. Plant Res., 2016. 129(2): p. 149-57 [PMID:26815763] Nakasone Y,Ohshima M,Okajima K,Tokutomi S,Terazima M Photoreaction Dynamics of LOV1 and LOV2 of Phototropin from Chlamydomonas reinhardtii. J Phys Chem B, 2018. 122(6): p. 1801-1815 [PMID:29355019]