PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa005345
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family DBB
Protein Properties Length: 211aa    MW: 23305.1 Da    PI: 6.4052
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58683607PU_refUnigeneView CDS
PUT-187a-Lactuca_sativa-29823PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box23.21.4e-07433534
   zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeH 34
                C+ +e+  ++lfC  ++  lC+ C ++ H
  Lsa005345  4 LCDVCESAAAILFCAADEAALCRACDEKVH 33
               7**************************998 PP
2zf-B_box24.55.7e-085291237
   zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg....H 37
               + ++C+ +e+ ++ ++C  +++ lC +C +  H g    H
  Lsa005345 52 DVPRCDICENAPAFFYCGIDGSSLCLQCDMVVHVGgkrtH 91
               5799**************************9996545555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003361.5E-8147IPR000315B-box-type zinc finger
PROSITE profilePS5011910.153147IPR000315B-box-type zinc finger
CDDcd000213.82E-7345No hitNo description
PfamPF006434.8E-6341IPR000315B-box-type zinc finger
PROSITE profilePS501198.5035196IPR000315B-box-type zinc finger
SMARTSM003363.1E-105196IPR000315B-box-type zinc finger
PfamPF006435.7E-65291IPR000315B-box-type zinc finger
CDDcd000213.38E-65484No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MRTLCDVCES AAAILFCAAD EAALCRACDE KVHMCNKLAS RHVRVGLADP SDVPRCDICE  60
NAPAFFYCGI DGSSLCLQCD MVVHVGGKRT HGRYLLLRQQ VEFPGDRNGN GREDELGSQP  120
VDPNNPPKLT TRDNHNHNQH HRLSAIGMME NNNNTDNVGR MENKMIDLNS KPQRMHGQTS  180
NNQEQGMEIS GGNNECASVV PIGSFKREPE K
Functional Description ? help Back to Top
Source Description
UniProtActs as negative regulator of seedling photomorphogenesis. {ECO:0000269|PubMed:18540109}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023755231.11e-156B-box zinc finger protein 19-like
SwissprotC0SVM53e-82BBX19_ARATH; B-box zinc finger protein 19
TrEMBLA0A118K2C51e-127A0A118K2C5_CYNCS; Zinc finger, B-box
STRINGcassava4.1_016111m1e-113(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38960.11e-84DBB family protein