PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa005481

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

NAC

Protein Properties

Length: 340aa MW: 39292.7 Da PI: 5.5123

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Lsa#S58682844	PU_ref	Unigene	View CDS
PUT-187a-Lactuca_sativa-28698	PU_unref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	150.9	6.3e-47	11	138	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk..kgel 99 pGfrFhPt+eel+++yLkk v+gk+ ++ ++i ++iy ++Pw Lp k +e+ewyfF++rd+k+ +g r+nr+t++g+Wkatg+d++++s +++ Lsa005481 11 LPGFRFHPTEEELLDFYLKKMVSGKNARF-DIIGYLNIYLYDPWALPGLSKIGEREWYFFVPRDRKHGSGGRPNRTTQNGFWKATGSDRKIFSLsdPKKH 109 59**********************999.99***********8778899*********************************998667788 PP NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128 glkktLvfykgrap+g+ktdWvm+eyrl Lsa005481 110 LGLKKTLVFYKGRAPRGNKTDWVMNEYRL 138 *************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	5.75E-55	6	156	IPR003441	NAC domain
PROSITE profile	PS51005	53.913	10	156	IPR003441	NAC domain
Pfam	PF02365	3.3E-25	12	138	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 340 aa Download sequence Send to blast
MDATYNLELQ LPGFRFHPTE EELLDFYLKK MVSGKNARFD IIGYLNIYLY DPWALPGLSK 60 IGEREWYFFV PRDRKHGSGG RPNRTTQNGF WKATGSDRKI FSLSDPKKHL GLKKTLVFYK 120 GRAPRGNKTD WVMNEYRLPD NYPLAKEIVL CKIYRKATSM KVLEQRAAME EETKTLQVPT 180 PLSPEETISF YTQTNEIAPP NPIPATPMES CHVVSDSNDE FYQDLLLFMD EKLKDECSPE 240 SCHVASDNKD GLRHDKMFTF DEKLKEEPDV ISDATSSNIE DSTNNKVSGL RVPLGKEMIR 300 ELQLPKMNMD WTQDSFWTQL CSPWLENITL TSPYANILNF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-44	12	161	19	170	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-44	12	161	19	170	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-44	12	161	19	170	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-44	12	161	19	170	NO APICAL MERISTEM PROTEIN
3swm_A	1e-44	12	161	22	173	NAC domain-containing protein 19
3swm_B	1e-44	12	161	22	173	NAC domain-containing protein 19
3swm_C	1e-44	12	161	22	173	NAC domain-containing protein 19
3swm_D	1e-44	12	161	22	173	NAC domain-containing protein 19
3swp_A	1e-44	12	161	22	173	NAC domain-containing protein 19
3swp_B	1e-44	12	161	22	173	NAC domain-containing protein 19
3swp_C	1e-44	12	161	22	173	NAC domain-containing protein 19
3swp_D	1e-44	12	161	22	173	NAC domain-containing protein 19
4dul_A	1e-44	12	161	19	170	NAC domain-containing protein 19
4dul_B	1e-44	12	161	19	170	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds sequence-specific DNA motifs. Involved in stress response. Plays a positive role in drought and salt stress tolerance through the modulation of abscisic acid-mediated signaling. {ECO:0000269\|PubMed:26834774}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by drought stress, salt stress and abscisic acid (ABA). {ECO:0000269\|PubMed:26834774}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023751284.1	0.0	NAC domain-containing protein 22
Swissprot	Q10S65	1e-88	NAC22_ORYSJ; NAC domain-containing protein 22
TrEMBL	A0A2J6M5Y0	0.0	A0A2J6M5Y0_LACSA; Uncharacterized protein
STRING	GLYMA12G02540.1	1e-115	(Glycine max)

Publications ? help Back to Top
Hong Y,Zhang H,Huang L,Li D,Song F Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice. Front Plant Sci, 2016. 7: p. 4 [PMID:26834774]