PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa005482
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family WRKY
Protein Properties Length: 282aa    MW: 31603.1 Da    PI: 6.6994
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58684818PU_refUnigeneView CDS
PUT-187a-Lactuca_sativa-55250PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY79.73.2e-25125184259
                --SS-EEEEEEE--TT-SS-EEEEEE-ST..T---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa..gCpvkkkversaedpkvveitYegeHnhe 59 
                +Dgy+WrKYGqKe+ +++fpr Y+rCt++  gC++ ++v++ ++  ++++itY g+H+++
  Lsa005482 125 EDGYAWRKYGQKEILNAKFPRCYFRCTHKteGCKALRQVQKLEDGSQMFHITYYGNHTCQ 184
                8***************************999***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.6E-24116185IPR003657WRKY domain
PROSITE profilePS5081119.129119181IPR003657WRKY domain
SuperFamilySSF1182906.67E-23121184IPR003657WRKY domain
SMARTSM007744.6E-34124185IPR003657WRKY domain
PfamPF031061.2E-23125184IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MEETSSPNKK RLIAELIKGR DSTKKLQNLL RRKVDDDDGS VSADDLVMKI LGSFSDSLSV  60
LSSCGSAVLC PVPVSMYVGS SCSGDRTCDS GESEKKPAPA VKDRRGCYKR RKTEDSRVKI  120
VDTIEDGYAW RKYGQKEILN AKFPRCYFRC THKTEGCKAL RQVQKLEDGS QMFHITYYGN  180
HTCQNTNKNT HMFSDSGALS FFLHNFKDSN TNNLPSSPST ITNVHNTPSL EQEDDSNVQS  240
DEHISSSNYG QSSIASWNDI FDHGSSMDDL KFDDAVFCKF DY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A1e-18120184469OsWRKY45
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023737392.10.0probable WRKY transcription factor 70
TrEMBLA0A2J6K7F50.0A0A2J6K7F5_LACSA; Uncharacterized protein
STRINGXP_010067621.13e-58(Eucalyptus grandis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.11e-38WRKY DNA-binding protein 70