PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa005566

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

MIKC_MADS

Protein Properties

Length: 232aa MW: 26874.7 Da PI: 9.1869

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-187a-Lactuca_sativa-8377	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	86.9	1.2e-27	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+ien++nrqvt+skRrng++KKA+EL vLCda+v++i++s t+kl+ey+s Lsa005566 9 KKIENSTNRQVTYSKRRNGLFKKASELTVLCDAKVSIIMVSCTDKLHEYIS 59 68***********************************************86 PP
2	K-box	75.4	1.6e-25	71	168	1	98
K-box 1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 yqk++g +l++++++++q+el++ k+ ++nL++++R++lG++Le+L+++eL Le++ ++++ iR++K +++ +++e+++kk +++q+ k+L +++ Lsa005566 71 YQKATGIDLWNSHYQKMQEELRQQKEGNRNLRKQIRQRLGDCLEDLNFEELLALEKDSQEAVYIIRERKLKVIGNKVETSKKKVRSAQDVYKKLMHEF 168 89999*****************************************************************************************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	30.319	1	61	IPR002100	Transcription factor, MADS-box
SMART	SM00432	9.3E-38	1	60	IPR002100	Transcription factor, MADS-box
CDD	cd00265	4.41E-38	2	80	No hit	No description
PROSITE pattern	PS00350	0	3	57	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	9.94E-36	3	95	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	7.7E-26	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	5.2E-24	10	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	7.7E-26	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	7.7E-26	38	59	IPR002100	Transcription factor, MADS-box
Pfam	PF01486	2.1E-14	82	168	IPR002487	Transcription factor, K-box
PROSITE profile	PS51297	13.683	84	174	IPR002487	Transcription factor, K-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 232 aa Download sequence Send to blast
MARGKIQIKK IENSTNRQVT YSKRRNGLFK KASELTVLCD AKVSIIMVSC TDKLHEYISP 60 SITMKQFFDQ YQKATGIDLW NSHYQKMQEE LRQQKEGNRN LRKQIRQRLG DCLEDLNFEE 120 LLALEKDSQE AVYIIRERKL KVIGNKVETS KKKVRSAQDV YKKLMHEFDL RGEDPQYGMI 180 EDGLEYENVY GYPQISPPNI LTLRLQSEHP NNLHIVPGGA NASDMTTYGL LG

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in the genetic control of flower development. Acts in conjunction with GLOBOSA (glo).

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024976425.1	1e-157	floral homeotic protein DEFICIENS-like
Swissprot	P23706	4e-96	DEFA_ANTMA; Floral homeotic protein DEFICIENS
TrEMBL	A0A2U1MBS2	1e-156	A0A2U1MBS2_ARTAN; MADS-box transcription factor CDM19
STRING	XP_009794650.1	2e-97	(Nicotiana sylvestris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54340.1	6e-89	MIKC_MADS family protein

Publications ? help Back to Top
Schwarz-Sommer Z, et al. Characterization of the Antirrhinum floral homeotic MADS-box gene deficiens: evidence for DNA binding and autoregulation of its persistent expression throughout flower development. EMBO J., 1992. 11(1): p. 251-63 [PMID:1346760] Sommer H, et al. Deficiens, a homeotic gene involved in the control of flower morphogenesis in Antirrhinum majus: the protein shows homology to transcription factors. EMBO J., 1990. 9(3): p. 605-13 [PMID:1968830] Gallois JL, et al. Functional characterization of the plant ubiquitin regulatory X (UBX) domain-containing protein AtPUX7 in Arabidopsis thaliana. Gene, 2013. 526(2): p. 299-308 [PMID:23747397] Davies B,Egea-Cortines M,de Andrade Silva E,Saedler H,Sommer H Multiple interactions amongst floral homeotic MADS box proteins. EMBO J., 1996. 15(16): p. 4330-43 [PMID:8861961]