PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa005632

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

NAC

Protein Properties

Length: 398aa MW: 45194 Da PI: 5.9768

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Lsa#S58689253	PU_ref	Unigene	View CDS
PUT-187a-Lactuca_sativa-5442	PU_unref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	181.8	1.7e-56	18	149	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk....k 96 lppGfrFhPtdee++++yL++kv ++++++ ++i evd++k+ePwdLp+++k +ekew+fF++rd+ky+tg r+nrat+sgyWkatgkdke+++k + Lsa005632 18 LPPGFRFHPTDEEIITHYLTPKVVNRNFSA-SAIGEVDLNKCEPWDLPRRAKMGEKEWFFFCQRDRKYPTGMRTNRATDSGYWKATGKDKEIHNKkgksT 116 79************************99.88***********99999*************************************966666 PP NAM 97 gelvglkktLvfykgrapkgektdWvmheyrle 129 g+lvg+kktLvfykgrapkgekt+Wvmhe+rle Lsa005632 117 GKLVGMKKTLVFYKGRAPKGEKTNWVMHEFRLE 149 666*************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	5.36E-64	15	173	IPR003441	NAC domain
PROSITE profile	PS51005	60.107	18	173	IPR003441	NAC domain
Pfam	PF02365	1.7E-29	19	148	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 398 aa Download sequence Send to blast
MAEGTMVANE GDEALIGLPP GFRFHPTDEE IITHYLTPKV VNRNFSASAI GEVDLNKCEP 60 WDLPRRAKMG EKEWFFFCQR DRKYPTGMRT NRATDSGYWK ATGKDKEIHN KKGKSTGKLV 120 GMKKTLVFYK GRAPKGEKTN WVMHEFRLEG DFSYYNMSRA SKDEWVVCRI VQKSTEIRRN 180 NPNNDNHGIN SFVDELLDMP PLMDTPAPYL NPGSSYNHSD TNNITNNHKE NANAQKFKGL 240 VDNDNYPSYF SHVQPQLLQK DQDYKNFIVS PYNYNFDTNS YQINPFISDH QSNFTCANSF 300 STNFPYLSSG STRYMGRSSG LEGEEEPGVR QCKVEPYVTT NTNQSSKISV TSQDTGISNE 360 ITTEISSSSM HDTMGPYDHP DDQPAPSALS ELDSLLDY

Sequence ? help Back to Top

Protein Sequence Length: 398 aa Download sequence Send to blast

MAEGTMVANE GDEALIGLPP GFRFHPTDEE IITHYLTPKV VNRNFSASAI GEVDLNKCEP  60
WDLPRRAKMG EKEWFFFCQR DRKYPTGMRT NRATDSGYWK ATGKDKEIHN KKGKSTGKLV  120
GMKKTLVFYK GRAPKGEKTN WVMHEFRLEG DFSYYNMSRA SKDEWVVCRI VQKSTEIRRN  180
NPNNDNHGIN SFVDELLDMP PLMDTPAPYL NPGSSYNHSD TNNITNNHKE NANAQKFKGL  240
VDNDNYPSYF SHVQPQLLQK DQDYKNFIVS PYNYNFDTNS YQINPFISDH QSNFTCANSF  300
STNFPYLSSG STRYMGRSSG LEGEEEPGVR QCKVEPYVTT NTNQSSKISV TSQDTGISNE  360
ITTEISSSSM HDTMGPYDHP DDQPAPSALS ELDSLLDY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-53	16	179	15	171	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-53	16	179	15	171	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-53	16	179	15	171	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-53	16	179	15	171	NO APICAL MERISTEM PROTEIN
4dul_A	1e-53	16	179	15	171	NAC domain-containing protein 19
4dul_B	1e-53	16	179	15	171	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023756820.1	0.0	NAC domain-containing protein 87-like
Swissprot	Q9FK44	2e-94	NAC87_ARATH; NAC domain-containing protein 87
TrEMBL	A0A2J6LTR6	0.0	A0A2J6LTR6_LACSA; Uncharacterized protein
STRING	VIT_08s0007g07640.t01	1e-116	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18270.1	2e-96	Arabidopsis NAC domain containing protein 87

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]