PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa005644

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

MYB

Protein Properties

Length: 286aa MW: 32695.9 Da PI: 7.3604

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-187a-Lactuca_sativa-10260	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	48.6	1.9e-15	33	80	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l++ + G+ +W++ ++ g++R++k+c++rw +yl Lsa005644 33 KGPWTAEEDKKLIKFILTNGPCCWRALPKLAGLRRCGKSCRLRWTNYL 80 79********************************************97 PP
2	Myb_DNA-binding	52.4	1.2e-16	89	130	4	47
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 T+ E+++ +d++++lG++ W++Ia+ ++ gRt++++k++w+++ Lsa005644 89 LTESEEQIVIDLHARLGNR-WSKIASNLP-GRTDNEIKNHWNTH 130 69***************.*****.**********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	7.6E-21	24	82	IPR009057	Homeodomain-like
PROSITE profile	PS51294	14.463	28	80	IPR017930	Myb domain
SuperFamily	SSF46689	8.17E-27	30	127	IPR009057	Homeodomain-like
SMART	SM00717	2.0E-12	32	82	IPR001005	SANT/Myb domain
Pfam	PF00249	2.8E-14	33	80	IPR001005	SANT/Myb domain
CDD	cd00167	2.02E-8	35	80	No hit	No description
PROSITE profile	PS51294	27.107	81	135	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.2E-24	83	135	IPR009057	Homeodomain-like
SMART	SM00717	2.0E-15	85	133	IPR001005	SANT/Myb domain
Pfam	PF00249	1.0E-14	88	130	IPR001005	SANT/Myb domain
CDD	cd00167	3.88E-11	90	131	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 286 aa Download sequence Send to blast
RGMLLSLSGG GWWRCNQSVM GRQPCCDKLG VKKGPWTAEE DKKLIKFILT NGPCCWRALP 60 KLAGLRRCGK SCRLRWTNYL RPDLKRGLLT ESEEQIVIDL HARLGNRWSK IASNLPGRTD 120 NEIKNHWNTH IKKKLLKKGI DPVTHEPLQK ETQTSETSSA SSSSPSEDSS RYQNNHSLFF 180 DGISKEDSTV SLTENNLNVN DKPRPSIFQS LCDDEKLVSY FLDDNEPPLL DHISDWQLPN 240 NEKKSKNDTS EFTSWDDCAT WIMDCKDFGL DFLNEAEMSL MDNKRT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gv2_A	1e-30	33	135	4	105	MYB PROTO-ONCOGENE PROTEIN
1h88_C	7e-30	33	135	6	159	MYB PROTO-ONCOGENE PROTEIN
1h89_C	7e-30	33	135	6	159	MYB PROTO-ONCOGENE PROTEIN
1mse_C	1e-30	33	135	4	105	C-Myb DNA-Binding Domain
1msf_C	1e-30	33	135	4	105	C-Myb DNA-Binding Domain
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Functional Description ? help Back to Top
Source	Description
UniProt	R2R3 MYB-type transcription factor controlling the production of volatile benzoides in flowers by regulating the shikimate pathway, namely by activation of the 5-enol-pyruvylshikimate-3-phosphate synthase gene. This scent, mostly produced in the evening and night by the petals, attracts the pollinators. Anthocyanins production is not controlled by ODO1 as color and scent are produced at different stages of development. {ECO:0000269\|PubMed:15805488}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Increases before the onset of volatile emission at the end of the light period, peaks at night and decreases when volatile emission declines early morning.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023729973.1	0.0	protein ODORANT1-like
Swissprot	Q50EX6	1e-90	ODO1_PETHY; Protein ODORANT1
TrEMBL	A0A2J6KP65	0.0	A0A2J6KP65_LACSA; Uncharacterized protein
STRING	Gorai.004G201900.1	1e-105	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G22680.1	6e-84	myb domain protein 85

Publications ? help Back to Top
Verdonk JC,Haring MA,van Tunen AJ,Schuurink RC ODORANT1 regulates fragrance biosynthesis in petunia flowers. Plant Cell, 2005. 17(5): p. 1612-24 [PMID:15805488]