PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa005715

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

MIKC_MADS

Protein Properties

Length: 247aa MW: 28361.6 Da PI: 8.8682

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Lsa#S29964402	PU_ref	Unigene	View CDS
PUT-187a-Lactuca_sativa-20460	PU_unref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	71.2	9.1e-23	38	88	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 kri++ks r vtfskRr+g++KKA LSv Cd++va ++s +gklye++s Lsa005715 38 KRIQDKSSRLVTFSKRRTGLFKKARHLSVICDVDVAAFVISDSGKLYEFCS 88 79***********************************************96 PP
2	K-box	29.2	3.9e-11	144	199	44	99
K-box 44 esLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 ++ s+ ++ +Le++L+ +l + RskK++l++e +++ ++ ++l ee+++L+++l+ Lsa005715 144 NEVSVSDMTKLEEELHAALLHTRSKKTQLMVERMSTFHEQVRKLTEEKEELKQQLQ 199 78899************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	3.7E-31	30	89	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	9.16E-25	30	105	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	27.165	30	90	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.2E-21	32	52	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	5.3E-21	39	86	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.2E-21	52	67	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.2E-21	67	88	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS51297	7.503	111	204	IPR002487	Transcription factor, K-box
Pfam	PF01486	7.3E-8	141	198	IPR002487	Transcription factor, K-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 247 aa Download sequence Send to blast
XGGFCERAGD QKLELRVRRL IHPSAGREKM GRRKLEIKRI QDKSSRLVTF SKRRTGLFKK 60 ARHLSVICDV DVAAFVISDS GKLYEFCSGG YNSNSVELIL SRYQAEERTT QEGAFEDMAF 120 NKSTRFRTCK ELLKSVRRVD EQPNEVSVSD MTKLEEELHA ALLHTRSKKT QLMVERMSTF 180 HEQVRKLTEE KEELKQQLQV ASAKKNQKDD VDDDGGEGLD HSANSHSYYQ TNLYPPQPLL 240 TLPLXQE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6byy_A	1e-13	30	88	1	59	MEF2 CHIMERA
6byy_B	1e-13	30	88	1	59	MEF2 CHIMERA
6byy_C	1e-13	30	88	1	59	MEF2 CHIMERA
6byy_D	1e-13	30	88	1	59	MEF2 CHIMERA
6bz1_A	9e-14	30	88	1	59	MEF2 CHIMERA
6bz1_B	9e-14	30	88	1	59	MEF2 CHIMERA
6bz1_C	9e-14	30	88	1	59	MEF2 CHIMERA
6bz1_D	9e-14	30	88	1	59	MEF2 CHIMERA
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Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023732397.1	1e-159	agamous-like MADS-box protein AGL27 isoform X1
TrEMBL	A0A2J6MCW0	1e-157	A0A2J6MCW0_LACSA; Uncharacterized protein