PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa005777

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

Dof

Protein Properties

Length: 331aa MW: 35861.7 Da PI: 9.0631

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Lsa#S58685293	PU_ref	Unigene	View CDS
PUT-187a-Lactuca_sativa-28800	PU_unref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124.5	3.4e-39	57	115	3	61
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +++l+cprCds+ntkfCyynny+l+qPr+fCk+CrryWtkGGalrnvP+Ggg+rknk + Lsa005777 57 NQKLRCPRCDSANTKFCYYNNYNLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKNKGT 115 6899****************************************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	1.7E-32	58	113	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.366	60	114	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	6.0E-25	60	113	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	62	98	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 331 aa Download sequence Send to blast
MIQELFGGGA TGLLNRDRDL PVSGAFEPSP SPSPSSSTTN TATTNAPTAA NPTTSDNQKL 60 RCPRCDSANT KFCYYNNYNL TQPRHFCKTC RRYWTKGGAL RNVPIGGGCR KNKGTTIATT 120 IGKPISSNGK LKAVVSSELG KSGFINGFEH EFTHNPILWS APPQTSHLLS LLRATQNPNP 180 NFASNSVTHI KDQGFMVGSH MSNLGFEPLG QASSLGLCSS LWRNNQVNQQ AQQNHHEQHQ 240 QGMMNSGHEV QNTENNQGQR YQRLRSSSPV NYFHHDQTTP LILGSNVANT SSSISTSTIL 300 DSSPVLASGE LGFWNQSLPW SDLAAANGAY P

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023762900.1	0.0	dof zinc finger protein DOF3.4-like
TrEMBL	A0A2J6MG04	0.0	A0A2J6MG04_LACSA; Uncharacterized protein
STRING	cassava4.1_031319m	3e-91	(Manihot esculenta)