PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa005782

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

MYB_related

Protein Properties

Length: 136aa MW: 15091.8 Da PI: 4.6531

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Lsa#S58656701	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	47.1	5.6e-15	26	69	2	47
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 g ++eE++l+++++ +lG++ W++Ia +++ gRt++++k++w++ Lsa005782 26 GGISPEEEDLILRLHCLLGNR-WALIAGRIP-GRTDNEIKNYWNTN 69 5569***************.*****.*********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	6.8E-21	19	75	IPR009057	Homeodomain-like
PROSITE profile	PS51294	21.955	20	74	IPR017930	Myb domain
SuperFamily	SSF46689	4.41E-13	20	80	IPR009057	Homeodomain-like
SMART	SM00717	4.0E-13	24	72	IPR001005	SANT/Myb domain
Pfam	PF00249	6.9E-14	26	70	IPR001005	SANT/Myb domain
CDD	cd00167	2.46E-11	29	70	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 136 aa Download sequence Send to blast
EGGAPAVWEE LPPPVDELPS PSVKRGGISP EEEDLILRLH CLLGNRWALI AGRIPGRTDN 60 EIKNYWNTNL SKKLISQGID PRTHKPLSSS SSNPNYQNFV HLSCSMEQPE VGLPNSNEII 120 SNPNSNKDEN KEDEIL

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1 or BHLH042/TT8. {ECO:0000269\|PubMed:15361138}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023754863.1	3e-78	transcription repressor MYB5-like
Swissprot	Q38850	2e-34	MYB5_ARATH; Transcription repressor MYB5
TrEMBL	A0A2J6LXY2	7e-77	A0A2J6LXY2_LACSA; Uncharacterized protein
STRING	POPTR_0003s21120.1	1e-36	(Populus trichocarpa)

Publications ? help Back to Top
Ranocha P,Francoz E,Burlat V,Dunand C Expression of PRX36, PMEI6 and SBT1.7 is controlled by complex transcription factor regulatory networks for proper seed coat mucilage extrusion. Plant Signal Behav, 2014. 9(11): p. e977734 [PMID:25531128]