PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa005865
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family C2H2
Protein Properties Length: 408aa    MW: 44878.1 Da    PI: 8.4195
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-187a-Lactuca_sativa-7181PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.40.000112343323
               ETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
               C++C+k F r  nL+ H r H
  Lsa005865 23 CEICNKGFQRDQNLQLHRRGH 43
               *******************88 PP
2zf-C2H212.20.0005598120123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                +kC++C+k +  +s+ k H + +
  Lsa005865  98 WKCEKCSKKYAVQSDWKAHSKIC 120
                58*****************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.44E-72043No hitNo description
Gene3DG3DSA:3.30.160.601.8E-52043IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.112143IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.8242143IPR007087Zinc finger, C2H2
PROSITE patternPS0002802343IPR007087Zinc finger, C2H2
SMARTSM003551106393IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.2E-485119IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.44E-793118No hitNo description
SMARTSM0035514098118IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 408 aa     Download sequence    Send to blast
XDPDAEVVAL SPTSLMATNR FLCEICNKGF QRDQNLQLHR RGHNLPWKLK QRNKLEVVKK  60
KVYICPEKTC VHHDPARALG DLTGVKKHFS RKHGEKKWKC EKCSKKYAVQ SDWKAHSKIC  120
GTREYKCDCG TLFSRKDSFI THRAFCDALT EENSRMASFP MMSSTANLNF RNELMMLNGG  180
GGGGGVGMRF PGMYGGGMLE SNLDANGAKP RLPIWLDQHG NEPHLENPST SSFLGSSSSN  240
NNNGGMLPSE MVQRSNGSQE AAVAAYSGLQ LKEEGENKGE MQLNALHNYD TSSTPPPPTT  300
AHMSATALLQ KAAQMGSTRS SNPGDSNGFG LMSTSLSNFN SMKHDNNDEL MTMMTTTGTK  360
QSKGNVTNES HDGDLTRDFL GAGTNERRSF NLHQEPFKFT SSIDDSSI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C4e-3894159368Zinc finger protein JACKDAW
5b3h_F4e-3894159368Zinc finger protein JACKDAW
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023729801.10.0protein indeterminate-domain 9-like isoform X1
TrEMBLA0A2J6KPH70.0A0A2J6KPH7_LACSA; Uncharacterized protein
STRINGSolyc06g075250.2.11e-140(Solanum lycopersicum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03150.12e-98C2H2-like zinc finger protein