PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa005894
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family ERF
Protein Properties Length: 187aa    MW: 20583.9 Da    PI: 4.5535
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58675743PU_refUnigeneView CDS
PUT-187a-Lactuca_sativa-1750PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.84.2e-163378555
        AP2  5 GVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
               G+  ++++g+WvAeIr+p++   + r++lg++ tae+Aa+a++ a+++l+g
  Lsa005894 33 GI--RSRNGKWVAEIREPRK---SSRIWLGTYPTAEMAAAAYDVAALALKG 78
               55..5789*********854...5***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103219.1111786IPR001471AP2/ERF domain
SMARTSM003803.5E-233092IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.7E-253287IPR001471AP2/ERF domain
CDDcd000184.21E-143387No hitNo description
SuperFamilySSF541711.83E-173486IPR016177DNA-binding domain
PfamPF008471.1E-93678IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MDARETRLTC AMNTSFSTGG SSSASGKHPT LHGIRSRNGK WVAEIREPRK SSRIWLGTYP  60
TAEMAAAAYD VAALALKGGD AMLNFQEFVG SYRVPESPEP ALIRSAAGEA AELMKLFREK  120
EDDHKKQGGD EGETHQNDEF MDEEAIFDMP NLLVDMAEGM MVSPPRQPTT VEWSSGNSSE  180
CDNLWSY
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023752075.11e-139ethylene-responsive transcription factor ERF025-like
SwissprotQ9FJ903e-42ERF25_ARATH; Ethylene-responsive transcription factor ERF025
TrEMBLA0A2J6M4F51e-137A0A2J6M4F5_LACSA; Uncharacterized protein
STRINGXP_010278525.15e-53(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52020.12e-40ERF family protein
Publications ? help Back to Top
  1. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]