PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa005898

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

Nin-like

Protein Properties

Length: 195aa MW: 22070.8 Da PI: 9.14

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Lsa#S58666399	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	82.7	3.5e-26	38	86	4	52
RWP-RK 4 eisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 +s e++s++F++pi++AAkeL+v+lT+LK++CR++GI+RWPhRk+ sl Lsa005898 38 ALSRETISQFFYMPITQAAKELNVGLTLLKKRCRELGIRRWPHRKLMSL 86 6899******************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.257	19	106	IPR003035	RWP-RK domain
Pfam	PF02042	1.5E-21	39	86	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 195 aa Download sequence Send to blast
MVRSGYEKPQ KKLDHKGDNG NGYGNNGGCD SNYPSRMALS RETISQFFYM PITQAAKELN 60 VGLTLLKKRC RELGIRRWPH RKLMSLQTLI NNVQELEKSS GNGVEEKLQE AIMRLENERK 120 KMEEIPDLQL EDNTKRLRQA CFKANYKKRK TIGNNSSTSI TTYRQSPSSC SSTCVDNGGY 180 EAIEGGYGGD FAEQE

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023761275.1	1e-142	uncharacterized protein LOC111909726
Swissprot	Q9M9U9	1e-53	RKD1_ARATH; Protein RKD1
TrEMBL	A0A2J6LJA1	1e-140	A0A2J6LJA1_LACSA; Uncharacterized protein
STRING	XP_004301148.1	2e-58	(Fragaria vesca)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18790.1	3e-54	RWP-RK domain-containing protein