PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa005942
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family CO-like
Protein Properties Length: 444aa    MW: 50088.4 Da    PI: 6.049
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-187a-Lactuca_sativa-2321PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box29.41.7e-091760340
   zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
               +r C+++ +k+++++C  ++ +lC++C  + H+       H++v
  Lsa005942 17 ARACDNCIRKRARWYCAADDAFLCQSCDASVHSAnplarrHERV 60
               578*****************************657888888876 PP
2CCT67.24.6e-23391434144
        CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                Rea++ RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk++
  Lsa005942 391 REARVARYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRS 434
                9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011911.0071562IPR000315B-box-type zinc finger
SMARTSM003365.5E-111562IPR000315B-box-type zinc finger
PfamPF006435.5E-81760IPR000315B-box-type zinc finger
CDDcd000211.43E-91862No hitNo description
PfamPF062037.4E-18391433IPR010402CCT domain
PROSITE profilePS5101716.063391433IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 444 aa     Download sequence    Send to blast
MVSSDKKLAN VVGGKTARAC DNCIRKRARW YCAADDAFLC QSCDASVHSA NPLARRHERV  60
RLKVASLKLS SLEKPAPPPW HHGFTKKPRT PRGGNHHKQA SRRTSKSEES SMSFNPLHLV  120
PEIGSDETTA VTSDEQLLYQ VPIFDPFAAE LCLSGNSNEV ATPVKQTEAT TPVDADLHNG  180
SKVTFDLNSF NGLILPSDME LAEFAADVES LLGKGLDEES FAMEGLGLLD CREKDSGGES  240
LERVKVEEDQ MQCETVENEM EMMREPFQLS FDYDSPLWEE KDEKLTVEGG VGDRMGVVKE  300
DEDYHVVINI ERYDDENKKQ KRILKLDYEG IIAAWDEQRS PWTTGDRPEL DPDDCWPECL  360
GGCGIMHHQH HHPYGDMGMI TGNPAMLDGG REARVARYRE KRRTRLFSKK IRYEVRKLNA  420
EKRPRMKGRF VKRSSSSGFP LLSK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1401417RRTRLFSKKIRYEVRKL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023756065.10.0zinc finger protein CONSTANS-LIKE 16-like
TrEMBLA0A2J6LVB60.0A0A2J6LVB6_LACSA; Uncharacterized protein
STRINGVIT_01s0011g03520.t011e-172(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25440.11e-106B-box type zinc finger protein with CCT domain