PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa005988
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family EIL
Protein Properties Length: 318aa    MW: 35523.7 Da    PI: 9.8261
Description EIL family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58684204PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1EIN3416.62.7e-127402971262
                XXXXXXXXXXXXXXXXXXXXXXX..XXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
       EIN3   1 eelkkrmwkdqmllkrlkerkkqlledkeaatgakksnksneqarrkkmsraQDgiLkYMlkemevcnaqGfvYgiipekgkpvegasdsLraWWkekve 100
                e+l++rmwkd+++lkr+ke++k l   ++ a++++k +++++qarrkkmsraQDgiLkYMlk mevc+a+GfvYgi+pekgkpv+g+sd+LraWWkekv+
  Lsa005988  40 EDLERRMWKDRIKLKRIKEKQKILA--QQ-AAEKQKAKQTSDQARRKKMSRAQDGILKYMLKLMEVCKARGFVYGIVPEKGKPVSGSSDNLRAWWKEKVK 136
                89***************99999754..44.58999***************************************************************** PP

                XXXXXXXXXXXXXXXXXXXXXXXXX....XX----STTS-HHHHHHHHHHHSSSSSS-TTS--TTT--HHHH---S--HHHHHHT..--TT--.-----G CS
       EIN3 101 fdrngpaaiskyqaknlilsgesslqtersseshslselqDTtlgSLLsalmqhcdppqrrfplekgvepPWWPtGkelwwgelg..lskdqgtppykkp 198
                fd+ngpaai+ky+ +++    +++   ++ ++++ l++lqD+tlgSLLs+lmqhcdppqr+fplekg++pPWWPtG e+ww++lg  l+k q +ppykkp
  Lsa005988 137 FDKNGPAAIAKYDNECISK--GQGIGCQNGNSNSILQDLQDATLGSLLSSLMQHCDPPQRKFPLEKGLPPPWWPTGGEEWWSRLGpgLQKGQ-PPPYKKP 233
                ************7655544..4555557899999**************************************************96444444.7****** PP

                GG--HHHHHHHHHHHHHHTGGGHHHHHHTTTTSSSSTTT--SHHHHHHHHHHTTTTT-S--XXX CS
       EIN3 199 hdlkkawkvsvLtavikhmsptieeirelerqskylqdkmsakesfallsvlnqeekecatvsa 262
                hdlkk +kv+vLtavikhmsp+i++ir+l+rqsk+lqdkm+akes ++lsvl++ee+++ + s 
  Lsa005988 234 HDLKKIYKVGVLTAVIKHMSPNIAKIRRLVRQSKCLQDKMTAKESSIWLSVLSREEALILQSSG 297
                *********************************************************9977665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF048733.1E-12540289No hitNo description
Gene3DG3DSA:1.10.3180.101.4E-68164295IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
SuperFamilySSF1167686.67E-60168292IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MDDLMIDTNG LGDNSDIEGD DIRCDNIAEK DVSDEEIDAE DLERRMWKDR IKLKRIKEKQ  60
KILAQQAAEK QKAKQTSDQA RRKKMSRAQD GILKYMLKLM EVCKARGFVY GIVPEKGKPV  120
SGSSDNLRAW WKEKVKFDKN GPAAIAKYDN ECISKGQGIG CQNGNSNSIL QDLQDATLGS  180
LLSSLMQHCD PPQRKFPLEK GLPPPWWPTG GEEWWSRLGP GLQKGQPPPY KKPHDLKKIY  240
KVGVLTAVIK HMSPNIAKIR RLVRQSKCLQ DKMTAKESSI WLSVLSREEA LILQSSGDNG  300
GSGITGTPSG GGRPEKNR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wij_A2e-6916930011140ETHYLENE-INSENSITIVE3-like 3 protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in the ethylene response pathway. {ECO:0000269|PubMed:9215635, ECO:0000269|PubMed:9851977}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023742171.10.0ETHYLENE INSENSITIVE 3-like 3 protein
SwissprotO231161e-158EIL3_ARATH; ETHYLENE INSENSITIVE 3-like 3 protein
TrEMBLA0A2J6JXH60.0A0A2J6JXH6_LACSA; Uncharacterized protein
STRINGXP_008450447.10.0(Cucumis melo)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73730.11e-124ETHYLENE-INSENSITIVE3-like 3
Publications ? help Back to Top
  1. Frerigmann H,Gigolashvili T
    Update on the role of R2R3-MYBs in the regulation of glucosinolates upon sulfur deficiency.
    Front Plant Sci, 2014. 5: p. 626
    [PMID:25426131]
  2. Zheng ZL,Zhang B,Leustek T
    Transceptors at the boundary of nutrient transporters and receptors: a new role for Arabidopsis SULTR1;2 in sulfur sensing.
    Front Plant Sci, 2014. 5: p. 710
    [PMID:25566284]
  3. Panda SK,Sunkar R
    Nutrient- and other stress-responsive microRNAs in plants: Role for thiol-based redox signaling.
    Plant Signal Behav, 2015. 10(4): p. e1010916
    [PMID:25912823]
  4. Wawrzyńska A,Sirko A
    EIN3 interferes with the sulfur deficiency signaling in Arabidopsis thaliana through direct interaction with the SLIM1 transcription factor.
    Plant Sci., 2016. 253: p. 50-57
    [PMID:27968996]