PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa005989
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family MYB
Protein Properties Length: 375aa    MW: 42662.4 Da    PI: 6.7483
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-187a-Lactuca_sativa-51088PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.15.3e-151462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     rg+W++eEd +l+  + ++G+g +W + +++ g++R++k+c++rw++yl
        Lsa005989 14 RGPWSPEEDAKLKSFIDKYGTGgNWIALPHKAGLKRCGKSCRLRWLNYL 62
                     89*********************************************97 PP
2Myb_DNA-binding39.41.4e-1269111246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g +T +Ed+++  + +  G++ W+ Ia+ ++ gRt++++k++w++
        Lsa005989  69 GEFTDDEDKIICSLYASIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111
                      78*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.558962IPR017930Myb domain
SuperFamilySSF466891.98E-2611109IPR009057Homeodomain-like
SMARTSM007171.2E-111364IPR001005SANT/Myb domain
PfamPF002493.5E-141462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-231569IPR009057Homeodomain-like
CDDcd001671.26E-81662No hitNo description
PROSITE profilePS5129421.8563117IPR017930Myb domain
SMARTSM007179.5E-1267115IPR001005SANT/Myb domain
PfamPF002492.7E-1169111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.0E-2370117IPR009057Homeodomain-like
CDDcd001676.48E-870111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MGRAPCCDKE NVKRGPWSPE EDAKLKSFID KYGTGGNWIA LPHKAGLKRC GKSCRLRWLN  60
YLRPNIKHGE FTDDEDKIIC SLYASIGSRW SIIAAQLPGR TDNDIKNYWN TKLKKKLLAM  120
LPSFQKKASF FPSISLQSPS PYRSSDQFMT DNSSLFYGYT NFMNMNNNIN SLLTPTTNTT  180
TGVQDHLISP SPPPPPGADL NSLIGLMTNN IDNNENSFYL GYQENHQSMY NTPMEYHYLT  240
SDVKEPMLIF GSGGEGHEVS TTGSSSEAGS SLSQISYENF SKDHYHKQHQ HPIKQEEFTL  300
QGFRDHNQSF IINHDYTGQK QKVNSLKNYE SALHSDLEEV KQLIGNTNSS SSSYLFNDDD  360
EYKTTDDRRE ICYHY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-26141177108B-MYB
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023753079.10.0transcription factor RAX2-like
TrEMBLA0A2J6M2690.0A0A2J6M269_LACSA; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.13e-76myb domain protein 36