PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa006019
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family MYB
Protein Properties Length: 283aa    MW: 32805.6 Da    PI: 8.3212
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-187a-Lactuca_sativa-54835PU_refplantGDBView CDS
PUT-187a-Lactuca_sativa-54836PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.44.3e-152269148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+ Ed +lv  v+++G ++W+ Ia+  g++Rt+k+c++rw +yl
        Lsa006019 22 KGPWTEHEDYQLVFHVHMFGDRRWDFIANVSGLKRTGKSCRLRWVNYL 69
                     79********************************************97 PP
2Myb_DNA-binding50.45.3e-1675120148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++ + E+ l ++++ ++G++ W++Iar+++ gRt++++k++w++++
        Lsa006019  75 RGKMAPHEERLVLELHSKFGNR-WSKIARKLP-GRTDNEIKNYWRTHM 120
                      788899****************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.5011769IPR017930Myb domain
SuperFamilySSF466892.25E-2820116IPR009057Homeodomain-like
SMARTSM007172.4E-122171IPR001005SANT/Myb domain
PfamPF002492.4E-132269IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.1E-182376IPR009057Homeodomain-like
CDDcd001679.63E-92469No hitNo description
PROSITE profilePS5129425.58370124IPR017930Myb domain
SMARTSM007171.2E-1574122IPR001005SANT/Myb domain
PfamPF002491.0E-1375119IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-2377123IPR009057Homeodomain-like
CDDcd001679.09E-1180120No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
XTIKTQILER EDMVQEDETM RKGPWTEHED YQLVFHVHMF GDRRWDFIAN VSGLKRTGKS  60
CRLRWVNYLH PGLKRGKMAP HEERLVLELH SKFGNRWSKI ARKLPGRTDN EIKNYWRTHM  120
RKKAQEKKRT SLSRSPSPSF SHSSSSSSIC TSNPTIDSMP MIETKERSFY DTGGVEMFSV  180
MKGKNKNNNN SFKKAATRVS DSSEGHEGYC SMDDIWKDID LDLLEDDHSI KPVFDPYSEI  240
AVPSLTWEYN YCSSTSWTFN GQEEFGKDMI SLKSQQFSAG LTD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-272012425128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:16463103}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023761053.10.0transcription factor MYB48-like
SwissprotQ9LX826e-73MYB48_ARATH; Transcription factor MYB48
TrEMBLA0A2J6LJX41e-149A0A2J6LJX4_LACSA; Uncharacterized protein
STRINGVIT_06s0004g04140.t012e-84(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46130.14e-69myb domain protein 48
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Nishida S,Kakei Y,Shimada Y,Fujiwara T
    Genome-wide analysis of specific alterations in transcript structure and accumulation caused by nutrient deficiencies in Arabidopsis thaliana.
    Plant J., 2017. 91(4): p. 741-753
    [PMID:28586097]
  4. Imran QM, et al.
    Transcriptome profile of NO-induced Arabidopsis transcription factor genes suggests their putative regulatory role in multiple biological processes.
    Sci Rep, 2018. 8(1): p. 771
    [PMID:29335449]