PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa006043

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

G2-like

Protein Properties

Length: 354aa MW: 39703.9 Da PI: 8.3559

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Lsa#S58684303	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	98.2	5.7e-31	240	295	1	56
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r++W++eLH+rF++a++ LGGs++AtPk+i+elm v+gLt+++vkSHLQkYRl+ Lsa006043 240 KQRRCWSTELHRRFLNALQLLGGSKVATPKQIRELMRVDGLTNDEVKSHLQKYRLH 295 79****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.802	237	297	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	2.5E-27	237	298	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.33E-17	237	298	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	8.2E-27	240	295	IPR006447	Myb domain, plants
Pfam	PF00249	7.4E-7	242	293	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 354 aa Download sequence Send to blast
MEILNPAPEL SLDFKPTFIP KTISQFLGEV ARIGSVCEKI LKVDDFVSRL ETEIRKIDAF 60 KRELPLCMLL MNDAIVTLKE ELTLFKNSAN PPTLEEFIPI NKTCDEDPKP ETDNGDKKNW 120 LSSTLLWNTN DNNPDTKQNN IPKQNPVQQV IQKRVDEEQD GITETPYNGN SRREFIPFKG 180 YITRNEDKEE SPIPGLSLIT PGIKNPMRGN GFVTKTNAIQ SNVKIGTPQP QPPQQQTSRK 240 QRRCWSTELH RRFLNALQLL GGSKVATPKQ IRELMRVDGL TNDEVKSHLQ KYRLHTRRLP 300 SSNSSAVPLW TQDQYLESSK YKDCHQSGSP DGPLNCTTAG TSTTGGTSAT TGGG

Sequence ? help Back to Top

Protein Sequence Length: 354 aa Download sequence Send to blast

MEILNPAPEL SLDFKPTFIP KTISQFLGEV ARIGSVCEKI LKVDDFVSRL ETEIRKIDAF  60
KRELPLCMLL MNDAIVTLKE ELTLFKNSAN PPTLEEFIPI NKTCDEDPKP ETDNGDKKNW  120
LSSTLLWNTN DNNPDTKQNN IPKQNPVQQV IQKRVDEEQD GITETPYNGN SRREFIPFKG  180
YITRNEDKEE SPIPGLSLIT PGIKNPMRGN GFVTKTNAIQ SNVKIGTPQP QPPQQQTSRK  240
QRRCWSTELH RRFLNALQLL GGSKVATPKQ IRELMRVDGL TNDEVKSHLQ KYRLHTRRLP  300
SSNSSAVPLW TQDQYLESSK YKDCHQSGSP DGPLNCTTAG TSTTGGTSAT TGGG

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023769638.1	0.0	transcription factor HHO5-like
TrEMBL	A0A2J6L0Z8	0.0	A0A2J6L0Z8_LACSA; Uncharacterized protein
STRING	XP_009345969.1	1e-114	(Pyrus x bretschneideri)
STRING	XP_009345970.1	1e-114	(Pyrus x bretschneideri)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37180.1	5e-54	G2-like family protein