PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa006119

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

TCP

Protein Properties

Length: 263aa MW: 27773.8 Da PI: 10.2082

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-187a-Lactuca_sativa-24375	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	126.4	2.9e-39	35	132	2	102
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg....kaaksaaks 97 a+kk + +++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as+++ + + +++nss + + + Lsa006119 35 AVKKPPAKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFSTVSVAVRNSNNSSLSaaldQ-------K 127 789******************************************************************88722222222222222222221.......1 PP TCP 98 kksqk 102 ++sq+ Lsa006119 128 SSSQH 132 11111 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	27.892	41	95	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	4.1E-34	41	133	IPR005333	Transcription factor, TCP

Sequence ? help Back to Top
Protein Sequence Length: 263 aa Download sequence Send to blast
XIYSMSTSEG AANGVPNAGI IDTQRQQPPG NGVLAVKKPP AKDRHSKVDG RGRRIRMPII 60 CAARVFQLTR ELGHKSDGQT IEWLLRQAEP SIIAATGTGT TPASFSTVSV AVRNSNNSSL 120 SAALDQKSSS QHHQHLISPT PFILGKRLRS EEDGLDGGGK EDNMSSATVV SAAAGGGFWA 180 LPARPDFGQV WSFAAAPQEM VVSSPTALAS QQGRFIHNQQ PMGEASAARV GNYLPMTQGH 240 LNLLASLSGP PPQSSGRKDD DTR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023736444.1	0.0	transcription factor TCP7-like
Swissprot	Q9FMX2	6e-89	TCP7_ARATH; Transcription factor TCP7
TrEMBL	A0A2J6K9I8	0.0	A0A2J6K9I8_LACSA; Uncharacterized protein
STRING	VIT_10s0042g00170.t01	1e-116	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23280.1	1e-65	TCP family protein