PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa006136
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family MYB
Protein Properties Length: 358aa    MW: 40507.4 Da    PI: 7.8131
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58684956PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding513.4e-161462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W++eEd +l++ ++++G+g +W + +++ g++R++k+c++rw++yl
        Lsa006136 14 KGPWSPEEDAKLKEFINKHGTGgNWIALPHKAGLKRCGKSCRLRWLNYL 62
                     79*********************************************97 PP
2Myb_DNA-binding37.65e-1269111246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g ++++Ed +++ + +  G++ W+ Ia  ++ gRt++++k++w++
        Lsa006136  69 GEFSEDEDRIIYSLYASIGSR-WSIIAGQLP-GRTDNDIKNYWNT 111
                      789******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.867962IPR017930Myb domain
SuperFamilySSF466891.98E-2711109IPR009057Homeodomain-like
SMARTSM007175.6E-131364IPR001005SANT/Myb domain
PfamPF002492.0E-151462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-231569IPR009057Homeodomain-like
CDDcd001674.63E-101662No hitNo description
PROSITE profilePS5129422.06563117IPR017930Myb domain
SMARTSM007171.4E-1167115IPR001005SANT/Myb domain
PfamPF002497.0E-1169111IPR001005SANT/Myb domain
CDDcd001671.59E-870113No hitNo description
Gene3DG3DSA:1.10.10.601.6E-2270117IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MGRAPCCDKT SVKKGPWSPE EDAKLKEFIN KHGTGGNWIA LPHKAGLKRC GKSCRLRWLN  60
YLRPNIKHGE FSEDEDRIIY SLYASIGSRW SIIAGQLPGR TDNDIKNYWN TKLRKKLLAM  120
LPSFQKKPSF HQSIPLQSSP LSDHQDNFLN TSLSFYNNSN FMNVSNSLLT TTGSSLFHDH  180
MNVTDLFVPP TSNPLTGMIS NNNYYSGFQG DQSLNKECYY PEVKERMLMF GGGGGEVLST  240
TCSSSDGGGS CMSQISYNKY DHHRIKQEDQ FSLQWFGDQR HAFMIDHNYV DDQKPKGYFK  300
NHVNPLHINL EEAKQLTGIN NNSSSSVNIS GYLMNDDDEN KTTRILTDGC YMMIDGSN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-28141177108B-MYB
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023738077.10.0transcription factor RAX2-like
TrEMBLA0A2J6K6040.0A0A2J6K604_LACSA; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.12e-74myb domain protein 36