PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa006227
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family MYB
Protein Properties Length: 193aa    MW: 22391.1 Da    PI: 7.5836
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58667677PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.18.8e-181764148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT eEd++l+++++ +G g W+t a+  g++Rt+k+c++rw++yl
        Lsa006227 17 KGPWTMEEDLILINYIADHGEGVWNTLAKSAGLKRTGKSCRLRWLNYL 64
                     79********************************************97 PP
2Myb_DNA-binding56.18.8e-1870113146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T+eE++l+ ++++++G++ W++Ia++++ gRt++++k++w++
        Lsa006227  70 RGNITPEEQLLIMELHAKFGNK-WSKIAKHLP-GRTDNEIKNYWRT 113
                      7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.7E-231067IPR009057Homeodomain-like
PROSITE profilePS5129415.7561264IPR017930Myb domain
SuperFamilySSF466896.6E-3115111IPR009057Homeodomain-like
SMARTSM007172.9E-131666IPR001005SANT/Myb domain
PfamPF002493.7E-161764IPR001005SANT/Myb domain
CDDcd001671.47E-101964No hitNo description
PROSITE profilePS5129425.42165119IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.5E-2668119IPR009057Homeodomain-like
SMARTSM007171.8E-1569117IPR001005SANT/Myb domain
PfamPF002491.3E-1670113IPR001005SANT/Myb domain
CDDcd001673.86E-1274113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MERIKSNTAV HDVEVRKGPW TMEEDLILIN YIADHGEGVW NTLAKSAGLK RTGKSCRLRW  60
LNYLRPDVRR GNITPEEQLL IMELHAKFGN KWSKIAKHLP GRTDNEIKNY WRTRIQKHMK  120
PTVNFNGETS SCHNNLPQMT SIQTCSVINP MELSHYSTCD SVINFPSPFD TETNENTWSM  180
EDLWSLQLLN NDX
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C6e-261411724126MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023746779.11e-143myb-related protein 340-like
SwissprotP813962e-85MYB40_ANTMA; Myb-related protein 340
TrEMBLA0A2J6JME11e-140A0A2J6JME1_LACSA; Uncharacterized protein
STRINGXP_009618404.13e-92(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27810.13e-80myb domain protein 21
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]