PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa006232
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family MYB
Protein Properties Length: 313aa    MW: 34929.2 Da    PI: 6.0954
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S18792861PU_unrefUnigeneView CDS
gnl|UG|Lsa#S29961816PU_unrefUnigeneView CDS
PUT-187a-Lactuca_sativa-55237PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.81.1e-171461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd++l d++++ G g+W++ ++  g++R++k+c++rw +yl
        Lsa006232 14 KGPWTPEEDQKLTDYIQKNGHGSWRALPKLAGLKRCGKSCRLRWTNYL 61
                     79********************************************97 PP
2Myb_DNA-binding53.84.6e-1767112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+++ eE+  +++++  lG++ W++Ia++++ gRt++++k++w+++l
        Lsa006232  67 RGKFSNEEENTILHLHSILGNK-WSAIAAHLP-GRTDNEIKNYWNTHL 112
                      89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.7E-24564IPR009057Homeodomain-like
PROSITE profilePS5129416.778961IPR017930Myb domain
SuperFamilySSF466897.86E-3111108IPR009057Homeodomain-like
SMARTSM007174.5E-141363IPR001005SANT/Myb domain
PfamPF002492.9E-161461IPR001005SANT/Myb domain
CDDcd001673.20E-111661No hitNo description
PROSITE profilePS5129426.49762116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.8E-2765117IPR009057Homeodomain-like
SMARTSM007171.1E-1666114IPR001005SANT/Myb domain
PfamPF002493.9E-1667112IPR001005SANT/Myb domain
CDDcd001671.09E-1269112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MGRSPCSEEN SVKKGPWTPE EDQKLTDYIQ KNGHGSWRAL PKLAGLKRCG KSCRLRWTNY  60
LRPDIKRGKF SNEEENTILH LHSILGNKWS AIAAHLPGRT DNEIKNYWNT HLKKRLIQMG  120
IDPMTHQPKT DLFSCLPQLI ALANLKELLE HTQLAHNLQY LNLLRQPTII ANNPELATAL  180
NATNFMATDQ EPNPYFSNDS LQVGQGRVEM SDFFSVENAP VGGGCSQPLQ QQVSIDQEVV  240
GQCQMGLMSD KSSSSTWNPL PPLMDSSGSN NTNSQENSST VSYGGGGASA LNWPDFIFED  300
SFLEDNLSEI RQI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-28141167108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269|PubMed:24902892}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269|PubMed:24902892}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023760828.10.0transcription factor MYB41-like
SwissprotQ9S9Z21e-98MYB93_ARATH; Transcription factor MYB93
TrEMBLA0A2J6LKC40.0A0A2J6LKC4_LACSA; Uncharacterized protein
STRINGXP_009790391.11e-100(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34670.11e-96myb domain protein 93
Publications ? help Back to Top
  1. Gibbs DJ,Coates JC
    AtMYB93 is an endodermis-specific transcriptional regulator of lateral root development in arabidopsis.
    Plant Signal Behav, 2014. 9(10): p. e970406
    [PMID:25482809]