PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa006253

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

NAC

Protein Properties

Length: 327aa MW: 36890.3 Da PI: 8.8627

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Lsa#S58682011	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	172.2	1.5e-53	15	142	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgel 99 lppGfrFhPtdeelvv+yLkkk+++ +l++ +i+evd+yk++Pw+Lp+k++ +++ewyfFs+rd+ky++g r+nra++sgyWkatg+dk++ls+ ++++ Lsa006253 15 LPPGFRFHPTDEELVVHYLKKKASSIPLPV-AIIAEVDLYKFDPWELPSKATFGDQEWYFFSPRDRKYPNGMRPNRAATSGYWKATGTDKPILSSrGDQK 113 79**************************.88***********988899***********************************9867788 PP NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128 vg+kk Lvfy g+ pkg kt+W+mheyrl Lsa006253 114 VGVKKALVFYGGKPPKGIKTNWIMHEYRL 142 *************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.14E-65	7	176	IPR003441	NAC domain
PROSITE profile	PS51005	61.781	15	175	IPR003441	NAC domain
Pfam	PF02365	6.2E-28	16	142	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 327 aa Download sequence Send to blast
MESTDSSTCS QYPNLPPGFR FHPTDEELVV HYLKKKASSI PLPVAIIAEV DLYKFDPWEL 60 PSKATFGDQE WYFFSPRDRK YPNGMRPNRA ATSGYWKATG TDKPILSSRG DQKVGVKKAL 120 VFYGGKPPKG IKTNWIMHEY RLVDHASFKS PIINLSNKKG SLRLDEWVLC RIYKKNNASR 180 LAERDSDNDY MENIIASKTT NSSGLTENNQ ETYFEIFNIN EDGSRIRQSN SISKFDSTSS 240 SMKSGVSSLI LNNGKRSFPT THYWNLESSE KRFHSDDDMN GMMDGNGSFI SLMNPVQQGI 300 GGFHPNTVLG SIGDSTLPYQ LSSLNWT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-74	14	180	16	170	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-74	14	180	16	170	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-74	14	180	16	170	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-74	14	180	16	170	NO APICAL MERISTEM PROTEIN
3swm_A	1e-74	14	180	19	173	NAC domain-containing protein 19
3swm_B	1e-74	14	180	19	173	NAC domain-containing protein 19
3swm_C	1e-74	14	180	19	173	NAC domain-containing protein 19
3swm_D	1e-74	14	180	19	173	NAC domain-containing protein 19
3swp_A	1e-74	14	180	19	173	NAC domain-containing protein 19
3swp_B	1e-74	14	180	19	173	NAC domain-containing protein 19
3swp_C	1e-74	14	180	19	173	NAC domain-containing protein 19
3swp_D	1e-74	14	180	19	173	NAC domain-containing protein 19
4dul_A	2e-74	14	180	16	170	NAC domain-containing protein 19
4dul_B	2e-74	14	180	16	170	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor of the NAC family (Probable). Together with NAC018/NARS2, regulates embryogenesis by regulating the development and degeneration of ovule integuments, a process required for intertissue communication between the embryo and the maternal integument (PubMed:18849494). {ECO:0000269\|PubMed:18849494, ECO:0000305}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By Jasmonic acid (JA). {ECO:0000269\|PubMed:16805732}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023755538.1	0.0	NAC transcription factor 56-like
Swissprot	Q9LD44	1e-102	NAC56_ARATH; NAC transcription factor 56
TrEMBL	A0A2J6LWJ9	0.0	A0A2J6LWJ9_LACSA; Uncharacterized protein
STRING	XP_002519008.1	1e-133	(Ricinus communis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G15510.1	1e-102	NAC domain containing protein 2

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]