PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa006314
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family CPP
Protein Properties Length: 153aa    MW: 16550.6 Da    PI: 9.3803
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-187a-Lactuca_sativa-39446PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR26.71.1e-08124151229
        TCR   2 ekkgCnCkkskClkkYCeCfaagkkCse 29 
                ++k+CnC++s+ l +YCeCfa   +C+ 
  Lsa006314 124 KRKQCNCTHSRSLTLYCECFAMAIYCDG 151
                789***********************75 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011147.3E-4123152IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS516349.635124153IPR005172CRC domain
PfamPF036383.2E-6126150IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 153 aa     Download sequence    Send to blast
MEKGEGGGDS NFPPKTNQSD AAEVSTATPM DIPAAKKLAR QLDFNSIGSS VPPAASMART  60
QVVLPEHPQR PVVVHVQHPA PPPPPPQPKQ SLLQQQQPLR PLKPESPKAR ARQNAEGKDG  120
TTKKRKQCNC THSRSLTLYC ECFAMAIYCD GSX
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023735842.12e-76protein tesmin/TSO1-like CXC 5
TrEMBLA0A2J6KAV97e-75A0A2J6KAV9_LACSA; Uncharacterized protein
STRINGXP_010105053.11e-29(Morus notabilis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.11e-18Tesmin/TSO1-like CXC domain-containing protein