PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa006334
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family C3H
Protein Properties Length: 438aa    MW: 46685.6 Da    PI: 8.1554
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58693187PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH38.22.4e-123863227
               -S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
               +++ C +++rtG+C yG+rC+F+H++
  Lsa006334 38 DEADCIYYLRTGFCGYGSRCRFNHPR 63
               6799********************96 PP
2zf-CCCH37.24.8e-1285109327
                S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                ++ C++++rtG Ck+G++Ck++H++
  Lsa006334  85 QPVCQYYMRTGMCKFGASCKYHHPR 109
                689********************96 PP
3zf-CCCH314.2e-10130155227
                -S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                ++++C+++ +tG+Ck+G +CkF+H++
  Lsa006334 130 GEKECSYYVKTGQCKFGMTCKFHHPQ 155
                7899********************97 PP
4zf-CCCH36.11.1e-11279305127
                --S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                +++++C+++++tG Ck+G++C+++H++
  Lsa006334 279 PGEAECQYYLKTGDCKFGSSCRYHHPR 305
                5789*********************96 PP
5zf-CCCH31.82.4e-10328351427
                ---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                + C ++a+ G Ck+G++CkF H++
  Lsa006334 328 AVCTHYAQKGVCKFGPSCKFDHPM 351
                78********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.2953664IPR000571Zinc finger, CCCH-type
SMARTSM003565.9E-53663IPR000571Zinc finger, CCCH-type
PfamPF006428.6E-103863IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.31E-63965IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-54263IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.27282110IPR000571Zinc finger, CCCH-type
SMARTSM003563.8E-782109IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.31E-683110IPR000571Zinc finger, CCCH-type
PfamPF006429.3E-985109IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.1E-587110IPR000571Zinc finger, CCCH-type
SMARTSM003562.3E-4128155IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.342128156IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-7130155IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.26E-5131155IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-5278305IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.46278306IPR000571Zinc finger, CCCH-type
PfamPF006424.5E-9280305IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.42E-6282306IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-4284306IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-6324351IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.418324352IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.05E-5327351IPR000571Zinc finger, CCCH-type
PfamPF006428.2E-8328351IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.8E-5329349IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 438 aa     Download sequence    Send to blast
MEMSQSDPVT EWNTSGGQTG LEEPMWQLGL ESYPERPDEA DCIYYLRTGF CGYGSRCRFN  60
HPRDRSSVVG AMRSAGGEYP QRIGQPVCQY YMRTGMCKFG ASCKYHHPRH GIGSSTTVLL  120
NMSGYPLRPG EKECSYYVKT GQCKFGMTCK FHHPQPVGIA PSPPPPPPPE SFSPMAASVT  180
YQSMQSPVAS SQQYGVFSGN WPVSRPSLLP GSYLAGSYGP PVMLPPGMVP FPGWNPYQAP  240
VNPNSNVGGG SMYAISPSHL SPAVPSYVSM AESAFPERPG EAECQYYLKT GDCKFGSSCR  300
YHHPREWNQP KTNFMLSPMG LPLRPGAAVC THYAQKGVCK FGPSCKFDHP MGGGGTLSYS  360
SSASSLADMS VAPYPVGTSI GTLAPSSSSS DIVSATNKNK DGLSTSTSTS ISVASGSVGS  420
SLSQSMPLSL SKSSTAAD
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023768694.10.0zinc finger CCCH domain-containing protein 34-like
SwissprotQ84W911e-145C3H32_ARATH; Zinc finger CCCH domain-containing protein 32
TrEMBLA0A2J6L2Z80.0A0A2J6L2Z8_LACSA; Uncharacterized protein
STRINGPGSC0003DMT4000583230.0(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18550.11e-126C3H family protein