PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa006465

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

NAC

Protein Properties

Length: 307aa MW: 35306.5 Da PI: 7.4174

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Lsa#S58678900	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	162.6	1.5e-50	28	153	3	128
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvg 101 pGfrFhP deelv +yL++k+e+k++++ e ike+diyk++PwdLpk +a+ekewyfF++r +ky+++ r+nr+t sg+Wkatg d++++s ++ +g Lsa006465 28 PGFRFHPMDEELVGFYLRRKIEKKPISI-ELIKEIDIYKYDPWDLPKGSNAGEKEWYFFCRRGRKYRNSIRPNRVTGSGFWKATGIDRPIYSGdGSVCIG 126 9*************************.89***********999999************************************845556 PP NAM 102 lkktLvfykgrapkgektdWvmheyrl 128 lkk+Lv+y+g+a kg+kt+W+mhe+rl Lsa006465 127 LKKSLVYYRGSAGKGTKTEWMMHEFRL 153 *************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.09E-54	25	180	IPR003441	NAC domain
PROSITE profile	PS51005	53.193	26	181	IPR003441	NAC domain
Pfam	PF02365	6.0E-25	28	153	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 307 aa Download sequence Send to blast
MDTQKQQLNN NSNYSREVVD EEENVPLPGF RFHPMDEELV GFYLRRKIEK KPISIELIKE 60 IDIYKYDPWD LPKGSNAGEK EWYFFCRRGR KYRNSIRPNR VTGSGFWKAT GIDRPIYSGD 120 GSVCIGLKKS LVYYRGSAGK GTKTEWMMHE FRLPPHSDNQ IDDKSIAPEA EVWTLCRILK 180 RSPCYKKTLP EWREVATRKS PPVVDTSSGD SDYDMQSYIS FQAPVINDNK PFANNHLPQQ 240 RYGTTNQLIM GQVTRSTLTS EPPSTTASCS SFSGLDMNEF IKHGDWEDLR AAVDQFSTAD 300 PFIFMCX

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	5e-47	28	187	22	174	NAC domain-containing protein 19
3swm_B	5e-47	28	187	22	174	NAC domain-containing protein 19
3swm_C	5e-47	28	187	22	174	NAC domain-containing protein 19
3swm_D	5e-47	28	187	22	174	NAC domain-containing protein 19
3swp_A	5e-47	28	187	22	174	NAC domain-containing protein 19
3swp_B	5e-47	28	187	22	174	NAC domain-containing protein 19
3swp_C	5e-47	28	187	22	174	NAC domain-containing protein 19
3swp_D	5e-47	28	187	22	174	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269\|PubMed:22345491}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269\|PubMed:22345491}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023756039.1	0.0	transcription factor JUNGBRUNNEN 1-like
Swissprot	Q9SK55	5e-87	NAC42_ARATH; Transcription factor JUNGBRUNNEN 1
TrEMBL	A0A2J6LVE6	0.0	A0A2J6LVE6_LACSA; Uncharacterized protein
STRING	XP_009778771.1	1e-118	(Nicotiana sylvestris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43000.1	2e-89	NAC domain containing protein 42

Publications ? help Back to Top
Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins. Plant Signal Behav, 2016. 11(6): p. e1181245 [PMID:27159137] Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling. Nat Plants, 2016. 2: p. 16013 [PMID:27249348] Shahnejat-Bushehri S, et al. Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato. Front Plant Sci, 2017. 8: p. 214 [PMID:28326087] Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways. Plant J., 2017. 92(6): p. 1106-1120 [PMID:29032592] Ebrahimian-Motlagh S, et al. JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13. Front Plant Sci, 2017. 8: p. 2118 [PMID:29326734]