PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa006541
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family CO-like
Protein Properties Length: 446aa    MW: 48731.6 Da    PI: 5.4263
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S32124593PU_unrefUnigeneView CDS
gnl|UG|Lsa#S58683576PU_unrefUnigeneView CDS
PUT-187a-Lactuca_sativa-4456385PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box17.68.1e-06444539
   zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                C++++e +   +C+++  +lC +C    H+       H++
  Lsa006541  4 QCDHCGEARSMVYCRSDAAYLCLSCDRVVHSAnalskrHSR 44
               5***************************9955667667765 PP
2zf-B_box27.75.5e-094686441
   zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg...Htvvp 41
                +C++++++++   C + ++ lC++C   +H+g   H++++
  Lsa006541 46 LVCDRCNSQPAVVRCVEEKVSLCQNCDWVGHNGsttHSRQT 86
               68*****************************9999998765 PP
3CCT57.54.7e-20343386144
        CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                R  a+lRY+eK+k RkFeK++rY++RKa+A+ R+RvKGrFvk+ 
  Lsa006541 343 RSDAVLRYREKKKMRKFEKRVRYATRKARADVRKRVKGRFVKAG 386
                889**************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003365.1E-6447IPR000315B-box-type zinc finger
PROSITE profilePS501199.655547IPR000315B-box-type zinc finger
CDDcd000211.18E-6547No hitNo description
PROSITE profilePS501199.4284387IPR000315B-box-type zinc finger
PfamPF006431.9E-54686IPR000315B-box-type zinc finger
CDDcd000217.06E-64787No hitNo description
SMARTSM003360.144887IPR000315B-box-type zinc finger
PROSITE profilePS5101715.289343385IPR010402CCT domain
PfamPF062035.9E-15343385IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 446 aa     Download sequence    Send to blast
MGYQCDHCGE ARSMVYCRSD AAYLCLSCDR VVHSANALSK RHSRTLVCDR CNSQPAVVRC  60
VEEKVSLCQN CDWVGHNGST THSRQTLNCY SGCPSAVELS SIWSFMTELP SVIDSTCEQG  120
IGSMSIADNS QGPSRSNNNQ DVVANESNLL TGSSSVHVDD KQENVVQQVG QLNSSSSKVS  180
HSGKKDAEAC DDDDDGFYGD FNMDEVDLSI ENYEELFGVG HNDPEHLFAK DGIDCLFGGA  240
ESNCHGSYAA KESSTGHGNQ VQPACSNAAS ADSLMSCKTE PNPCYGRQHS NISFSSLTGE  300
SSAGEYQDCG ASSSMLLMGE PPWFIQGGGG GGSDQTTTAI GSRSDAVLRY REKKKMRKFE  360
KRVRYATRKA RADVRKRVKG RFVKAGDAYD YDPMIKLEAT KNLDMFLYDM KISNGNDSDS  420
DSNFKIHPNH LIPTSSRQFQ EQQYLS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1350356REKKKMR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023752150.10.0zinc finger protein CONSTANS-LIKE 9-like
SwissprotQ9SSE51e-136COL9_ARATH; Zinc finger protein CONSTANS-LIKE 9
TrEMBLA0A2J6M4C00.0A0A2J6M4C0_LACSA; Uncharacterized protein
STRINGXP_009768363.11e-164(Nicotiana sylvestris)
STRINGXP_009601056.11e-164(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07650.41e-104CONSTANS-like 9