PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa006550

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

bHLH

Protein Properties

Length: 483aa MW: 53364.7 Da PI: 6.7303

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Lsa#S58691398	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	26.9	8.6e-09	319	366	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L+ l+P++ +k Ka +L + ++Y++sLq Lsa006550 319 SHSLAERVRREKIGERMKLLQNLVPNC----DKVTGKALMLDEIINYVQSLQ 366 8***********************9....555***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	2.87E-9	313	370	No hit	No description
SuperFamily	SSF47459	9.03E-17	313	382	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.2E-16	315	379	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.243	315	365	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	5.5E-6	319	366	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.1E-9	321	371	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 483 aa Download sequence Send to blast
MDRDFFLNTG LQFEPSSQSP WKLMTLMPEM NYPVEQASAD GVSRPNYSHF ESALSSMVSS 60 PVSNSTVSND IVAVRELIGK FRDGSPAAMT PPPPYSNTNT PLNPSPPKLN LPIIDHFMKE 120 NLPRIRNSMP LNPNLPLLTA DPGFAERAAK FSCFGSRSFN GRTHQLGINP NSPEFQIGSN 180 GSSPLTSNAK FPRVSSSPAL KIDPSPVRLE DNRNSEEINM KLNRLPGSAA NSNEESSVSE 240 QIPSGELGFK NQKDSNTRKR KGGSSKGIGS TAKKEEEPID DSNSKKLKKP EQENGDTKPQ 300 EAPKDYIHVR ARRGQATDSH SLAERVRREK IGERMKLLQN LVPNCDKVTG KALMLDEIIN 360 YVQSLQRQVE FLSMKLATVN PCLDFDGDNL LSQNANQSNV NLSQPTHHVQ SSTSTFYQQN 420 QQALFNGSTP SIQSGHQLAE PFLQFPGFGQ DDLQSIVQMG FGENLDLDAP FFRDQPSNMK 480 MEL

Sequence ? help Back to Top

Protein Sequence Length: 483 aa Download sequence Send to blast

MDRDFFLNTG LQFEPSSQSP WKLMTLMPEM NYPVEQASAD GVSRPNYSHF ESALSSMVSS  60
PVSNSTVSND IVAVRELIGK FRDGSPAAMT PPPPYSNTNT PLNPSPPKLN LPIIDHFMKE  120
NLPRIRNSMP LNPNLPLLTA DPGFAERAAK FSCFGSRSFN GRTHQLGINP NSPEFQIGSN  180
GSSPLTSNAK FPRVSSSPAL KIDPSPVRLE DNRNSEEINM KLNRLPGSAA NSNEESSVSE  240
QIPSGELGFK NQKDSNTRKR KGGSSKGIGS TAKKEEEPID DSNSKKLKKP EQENGDTKPQ  300
EAPKDYIHVR ARRGQATDSH SLAERVRREK IGERMKLLQN LVPNCDKVTG KALMLDEIIN  360
YVQSLQRQVE FLSMKLATVN PCLDFDGDNL LSQNANQSNV NLSQPTHHVQ SSTSTFYQQN  420
QQALFNGSTP SIQSGHQLAE PFLQFPGFGQ DDLQSIVQMG FGENLDLDAP FFRDQPSNMK  480
MEL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023752305.1	0.0	transcription factor bHLH62-like
TrEMBL	A0A2J6M3R5	0.0	A0A2J6M3R5_LACSA; Uncharacterized protein
STRING	EMJ02381	1e-120	(Prunus persica)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07340.1	1e-73	bHLH family protein