PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa006565
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family NF-YC
Protein Properties Length: 208aa    MW: 22367 Da    PI: 10.1084
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S29959515PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC37.45.6e-126851898
      NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98
               ++++P arikki++adedv +i+  +Pvl  k  + f   + + ++  +     +t++   ++ +v++ ++fdfl ++v +
  Lsa006565  6 DTRFPAARIKKIMQADEDVGKIAMAVPVL-QKLWNCFCKIFVIXTYDITLRRGAKTVNSLHLKHCVQSYNVFDFLREVVSK 85
               5789***********************86.4555555555556667777777888999999999************99976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.101.9E-16271IPR009072Histone-fold
SuperFamilySSF471131.01E-12387IPR009072Histone-fold
PfamPF008085.5E-12870IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
MKKKLDTRFP AARIKKIMQA DEDVGKIAMA VPVLQKLWNC FCKIFVIXTY DITLRRGAKT  60
VNSLHLKHCV QSYNVFDFLR EVVSKVPDYG HSDAAAGGAV GSGDDRTMVK RKKAAAGETN  120
ESDEELKRNR MNEAGQTGSN GRGRGRGRGR GRGRGRSSAD REAPQTDIEL ESCTPLIPST  180
TTTAATAAAA ATTAISDGGR DFDLNAGG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1jfi_A2e-14271575Transcription Regulator NC2 alpha chain
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1145154RGRGRGRGRG
2145155RGRGRGRGRGR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023766247.11e-100dr1-associated corepressor-like
TrEMBLA0A2J6L8P02e-98A0A2J6L8P0_LACSA; Uncharacterized protein
STRINGVIT_13s0084g00040.t012e-63(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12480.12e-52nuclear factor Y, subunit C11