PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa006615

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

NAC

Protein Properties

Length: 506aa MW: 56485.1 Da PI: 5.352

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-187a-Lactuca_sativa-29303	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	159.6	1.2e-49	9	138	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kg 97 lp+G+rF+Ptdeelv++yL+ k++g + e+ ++i+evd++k ePwdLp + +++ ++ew+fF+++d+ky++g+r+nrat sgyWkatgkd++++++ ++ Lsa006615 9 LPVGYRFRPTDEELVNHYLRLKINGFDKEV-SCIREVDVCKKEPWDLPdlSVIESIDNEWFFFCPKDRKYQNGQRSNRATVSGYWKATGKDRTIKTNrGS 107 799**********************999.89**********96447788899********************************998677 PP NAM 98 elvglkktLvfykgrapkgektdWvmheyrl 128 +++g kktLvfy+grapkge+t+Wv+hey + Lsa006615 108 SVIGKKKTLVFYTGRAPKGERTHWVIHEYCA 138 78*************************75 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.23E-56	4	161	IPR003441	NAC domain
PROSITE profile	PS51005	55.156	9	161	IPR003441	NAC domain
Pfam	PF02365	1.6E-25	10	137	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 506 aa Download sequence Send to blast
MAVLPAKSLP VGYRFRPTDE ELVNHYLRLK INGFDKEVSC IREVDVCKKE PWDLPDLSVI 60 ESIDNEWFFF CPKDRKYQNG QRSNRATVSG YWKATGKDRT IKTNRGSSVI GKKKTLVFYT 120 GRAPKGERTH WVIHEYCATE KELDGTHPGQ SPYVLCRLFK KHDGKDENAE SLDCVDVDQS 180 DASPPSVVKS STEDPQSEPV TPNLTGQPNI QPLLKENLKL EELNRTNDPL DFLDHSQLMN 240 DLDLDEALQG FWDASPDNFD SKLFSPLHSQ MQLELGSAYN YGMVNSGTGI VNEHYGMQNQ 300 YGTNGMEFSN SFLNESEQFS FGDSLAQASI PEFHQYSSES DGEVIQVQPM KLEKVSDENV 360 IFHLPHEHQA PKEESCSSSS SNIALASNGE GNSGTGIIIR NRQPKVANGI NFSNQGTAPR 420 RIRLQMKLQV GSVTHGGDQQ PIVTEEKKHS PGGSDGEFDE SLISNSNVKP KADFSHGMLS 480 WVYMHKVLVV VGLCVGIASL WKCLTY

Sequence ? help Back to Top

Protein Sequence Length: 506 aa Download sequence Send to blast

MAVLPAKSLP VGYRFRPTDE ELVNHYLRLK INGFDKEVSC IREVDVCKKE PWDLPDLSVI  60
ESIDNEWFFF CPKDRKYQNG QRSNRATVSG YWKATGKDRT IKTNRGSSVI GKKKTLVFYT  120
GRAPKGERTH WVIHEYCATE KELDGTHPGQ SPYVLCRLFK KHDGKDENAE SLDCVDVDQS  180
DASPPSVVKS STEDPQSEPV TPNLTGQPNI QPLLKENLKL EELNRTNDPL DFLDHSQLMN  240
DLDLDEALQG FWDASPDNFD SKLFSPLHSQ MQLELGSAYN YGMVNSGTGI VNEHYGMQNQ  300
YGTNGMEFSN SFLNESEQFS FGDSLAQASI PEFHQYSSES DGEVIQVQPM KLEKVSDENV  360
IFHLPHEHQA PKEESCSSSS SNIALASNGE GNSGTGIIIR NRQPKVANGI NFSNQGTAPR  420
RIRLQMKLQV GSVTHGGDQQ PIVTEEKKHS PGGSDGEFDE SLISNSNVKP KADFSHGMLS  480
WVYMHKVLVV VGLCVGIASL WKCLTY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-42	8	162	16	166	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-42	8	162	16	166	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-42	8	162	16	166	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-42	8	162	16	166	NO APICAL MERISTEM PROTEIN
3swm_A	2e-42	8	162	19	169	NAC domain-containing protein 19
3swm_B	2e-42	8	162	19	169	NAC domain-containing protein 19
3swm_C	2e-42	8	162	19	169	NAC domain-containing protein 19
3swm_D	2e-42	8	162	19	169	NAC domain-containing protein 19
3swp_A	2e-42	8	162	19	169	NAC domain-containing protein 19
3swp_B	2e-42	8	162	19	169	NAC domain-containing protein 19
3swp_C	2e-42	8	162	19	169	NAC domain-containing protein 19
3swp_D	2e-42	8	162	19	169	NAC domain-containing protein 19
4dul_A	2e-42	8	162	16	166	NAC domain-containing protein 19
4dul_B	2e-42	8	162	16	166	NAC domain-containing protein 19
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023768569.1	0.0	NAC domain-containing protein 91
TrEMBL	A0A2J6MJU6	0.0	A0A2J6MJU6_LACSA; Uncharacterized protein
STRING	XP_009608176.1	1e-117	(Nicotiana tomentosiformis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G24590.2	3e-93	TCV-interacting protein