PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa006688
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family bHLH
Protein Properties Length: 354aa    MW: 39468.5 Da    PI: 6.5071
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58682562PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.84.5e-14141192155
                CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                +r++h ++Er+RR+++N+ ++ Lr+l+P++   + ++ + a+i+  A+e++k+L+
  Lsa006688 141 QRMTHIAVERNRRKQMNEHLAVLRSLMPES---YVQRGDQASIVGGAIEFVKELE 192
                79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.19E-17139211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.49E-13139196No hitNo description
Gene3DG3DSA:4.10.280.107.8E-14139195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.199140191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.0E-11141192IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.1E-10146197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MALETLSSNE LLNFIIYDTI SATPFSCNDS SETTTTNTNP CSSFFYHLDN ENPNPPLNQL  60
CQELTGAAAA MEIMSSTSSL TTTTTKMSMA VQAYCGGKVP EKNYSNNNNG NNPNLGIQGG  120
GKKKRRRRPR VSKNKEEAET QRMTHIAVER NRRKQMNEHL AVLRSLMPES YVQRGDQASI  180
VGGAIEFVKE LEHLLQSLEA QKFILSQQQQ QQQEDEGGHN NNFNESSTPP PFSQFFSYPQ  240
YTCSQIPNKY TSKSKAAIAD IEVTLIETHA NIRILSHKRL TQLSKMVACF QTLHMSVLHL  300
NVTTLDPLVL YSISVKVEEG CRLNSADEIA GAVHQMLRII EEEATLSLCV DSIN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1121126KKKRRR
2121127KKKRRRR
3122127KKRRRR
4141152RMTHIAVERNRR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023736210.10.0transcription factor bHLH71-like
SwissprotQ9C7T47e-75BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A103XQV90.0A0A103XQV9_CYNCS; Myc-type, basic helix-loop-helix (BHLH) domain-containing protein
STRINGXP_009763212.11e-134(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.13e-69bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]