PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa006710

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

MYB_related

Protein Properties

Length: 250aa MW: 28063.7 Da PI: 7.889

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Lsa#S58678996	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	27.9	5.3e-09	193	247	1	46
TSSS-HHHHHHHHHHHHHTTTT.....-HHHHHHHHT....TTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.....tWktIartmg....kgRtlkqcksrwqk 46 r+rW++eE++ l+++v+++ Wk++ + + Rt+ ++k++w++ Lsa006710 193 RKRWSEEEEDMLKEGVQKFSATanknfPWKKVLEFGRhvfhTSRTPSDLKDKWRN 247 89*****************************9988**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57903	7.97E-8	23	83	IPR011011	Zinc finger, FYVE/PHD-type
Gene3D	G3DSA:3.30.40.10	1.9E-8	23	83	IPR013083	Zinc finger, RING/FYVE/PHD-type
SMART	SM00249	1.5E-5	27	72	IPR001965	Zinc finger, PHD-type
PROSITE pattern	PS01359	0	28	71	IPR019786	Zinc finger, PHD-type, conserved site
PROSITE profile	PS50090	7.608	192	249	IPR017877	Myb-like domain
Gene3D	G3DSA:1.10.10.60	5.2E-10	192	248	IPR009057	Homeodomain-like
SuperFamily	SSF46689	8.97E-10	192	248	IPR009057	Homeodomain-like
Pfam	PF00249	9.2E-7	193	247	IPR001005	SANT/Myb domain
CDD	cd11660	2.55E-13	194	250	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 250 aa Download sequence Send to blast
MASSACVRXV VDEIKGVFMM DFTEKELCVL CERGGKLLVC NDNGCPISVH EDCMGCSPRF 60 NETGNFCCPY CVYRRLTTET CQLRDKAMLA KKALSSFLGE NVAQNQSKSF SSPCESKHET 120 SVSEETDRIP NRNGEFSGVC DGSTCRIMVV YDGDACKEQG MNAKRVPVED EAGSSEKKTT 180 AFNGKPPLLK GKRKRWSEEE EDMLKEGVQK FSATANKNFP WKKVLEFGRH VFHTSRTPSD 240 LKDKWRNISK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023741717.1	1e-174	uncharacterized protein LOC111889798
Refseq	XP_023741718.1	1e-174	uncharacterized protein LOC111889798
TrEMBL	A0A2J6JY83	1e-172	A0A2J6JY83_LACSA; Uncharacterized protein