PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa006722
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family bZIP
Protein Properties Length: 331aa    MW: 36841.3 Da    PI: 8.9938
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58687777PU_refUnigeneView CDS
PUT-187a-Lactuca_sativa-49618PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_131.15.3e-104387246
               XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
     bZIP_1  2 kelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLk 46
               ++ k  rr+++NReAAr+sR+RKka++++Le    +L++  ++L+
  Lsa006722 43 RDQKTLRRLAQNREAARKSRLRKKAYVQQLESSRMKLSQLEQELQ 87
               567899*************************98888887776654 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1704.8E-83989No hitNo description
SMARTSM003389.8E-842105IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.4734488IPR004827Basic-leucine zipper domain
PfamPF001704.5E-74586IPR004827Basic-leucine zipper domain
SuperFamilySSF579594.25E-74689No hitNo description
PROSITE patternPS0003604964IPR004827Basic-leucine zipper domain
PfamPF141446.8E-31129203IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MAELSPRTDT STDGDTDDKA LGFHSGQSHS HGLVVSDASD KSRDQKTLRR LAQNREAARK  60
SRLRKKAYVQ QLESSRMKLS QLEQELQRAR QQGIFISSSG EQSQSTSGNG ASSFHVEYSR  120
WLDEQNRRIS ELREAVSSHA ADGELRLIVD GVITHYEDIF RIKGDAAKAD VFHILSGMWK  180
TPAERCFLWL GGFRSSELLK LLITQLEPLT EQQLLAINNL QQTSQQAEDA LSQGMDALQQ  240
SLAETLAGSL GSSSGSSGNV ANYMGQMAMA MGKLGTLEGF IRQADNLRQQ TLQQMHRILT  300
TRQSARALIA INDYFSRLRA LSSLWLARPR E
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023729342.10.0transcription factor TGA2.2-like
SwissprotQ415581e-176HBP1C_WHEAT; Transcription factor HBP-1b(c1) (Fragment)
TrEMBLA0A2J6KQH80.0A0A2J6KQH8_LACSA; Uncharacterized protein
STRINGMigut.F00128.1.p0.0(Erythranthe guttata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06950.41e-121bZIP family protein