PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa006912

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

SBP

Protein Properties

Length: 940aa MW: 105462 Da PI: 7.5268

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-187a-Lactuca_sativa-13780	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	126.5	1.1e-39	147	223	1	77
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 +Cqv++C++dls+ak+yhrrhkvC+ hska+++lv +++qrfCqqCsrfh l+efDe+krsCrrrLa+hn+rrrk++ Lsa006912 147 VCQVDDCRTDLSNAKDYHRRHKVCDLHSKATKALVLNVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNRRRRKST 223 6**************************************************************************87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	1.1E-31	141	209	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	31.633	145	222	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	4.84E-36	146	224	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	3.0E-28	148	221	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF48403	9.02E-9	720	828	IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	3.1E-7	735	833	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	6.09E-9	736	829	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 940 aa Download sequence Send to blast
MEARFGEKSH HYYGPVPVVS DLKAVGKRTM EWDLNDWKWD ADLFTATPSD YSSRQLFPVT 60 TSELQTNTGA SNSSSSCSVE INLQNQKGKR RVLVLDEEEV CGEAGALNLK LGAGGQVYPI 120 TEDEAERWEG KTGKKTKVAG TTSNRAVCQV DDCRTDLSNA KDYHRRHKVC DLHSKATKAL 180 VLNVMQRFCQ QCSRFHVLQE FDEGKRSCRR RLAGHNRRRR KSTHPENTVN GVSLNDEHGS 240 SYLLISLLRI LTNIHSNTSD QRSEQDLVTH LLKNLGNINA SNLSRLITGS QNFTNASTSI 300 PTLEKASQPL EYETMENGGA LQITDPSNNI IPFPPKSSPM EDTVGVGRMK FNTIDLNNAY 360 DDSQDCMETF DTFENTDNVP MWLRGGDPHK SSPPQTSGST ATQSPSSSSG EAQSRTDRIV 420 FKLFGKDPNE LPVLLRNQIL DWLSQSPSDI EGYIKPGCII LSVYLRMDNS SWDELCYDLS 480 SNLRKLLEAS SDSFWRTGWI YTRVLDHVAF ACDGQIVLNT SLPHNKNSTI LSVKPIAVSF 540 SETAQFSVKG FXLFMVNIKV DLCPRRQLPY PNKLLRCNRT VEIRRSSKSK TTTFQSLTFS 600 CSIPNIHGRG FIEIEDDSLS SSFFPFIVAE EDVCSEIRTL ETDIDDSKLE ARNQALEFIH 660 EMGWLLHRSQ LKSRLSSSMD PNSDLFSFDR FRWLIEFSVD HDWCRVVNKL LTLIFKGITV 720 INHTSVETAL LDIGLLHRAV RRNSRPMVEF LLNFRVPGPV LFKPDAVGPA GLTPLHIAAG 780 KDGSEDVLDA LTNDPQMVGV EAWRRSHDSS GLTPYDYASL RGHYPYIHLV QRKMNKNKGH 840 VVVDIPVKTK VKEGAELSLS FKGFEMEKAL VFKGRCNECE GKLGYYGGVR SSLAIYKPAM 900 LSMVAIAAVC VCVALLFKSS PQVMFVFQPF IWERLKYGAS

Sequence ? help Back to Top

Protein Sequence Length: 940 aa Download sequence Send to blast

MEARFGEKSH HYYGPVPVVS DLKAVGKRTM EWDLNDWKWD ADLFTATPSD YSSRQLFPVT  60
TSELQTNTGA SNSSSSCSVE INLQNQKGKR RVLVLDEEEV CGEAGALNLK LGAGGQVYPI  120
TEDEAERWEG KTGKKTKVAG TTSNRAVCQV DDCRTDLSNA KDYHRRHKVC DLHSKATKAL  180
VLNVMQRFCQ QCSRFHVLQE FDEGKRSCRR RLAGHNRRRR KSTHPENTVN GVSLNDEHGS  240
SYLLISLLRI LTNIHSNTSD QRSEQDLVTH LLKNLGNINA SNLSRLITGS QNFTNASTSI  300
PTLEKASQPL EYETMENGGA LQITDPSNNI IPFPPKSSPM EDTVGVGRMK FNTIDLNNAY  360
DDSQDCMETF DTFENTDNVP MWLRGGDPHK SSPPQTSGST ATQSPSSSSG EAQSRTDRIV  420
FKLFGKDPNE LPVLLRNQIL DWLSQSPSDI EGYIKPGCII LSVYLRMDNS SWDELCYDLS  480
SNLRKLLEAS SDSFWRTGWI YTRVLDHVAF ACDGQIVLNT SLPHNKNSTI LSVKPIAVSF  540
SETAQFSVKG FXLFMVNIKV DLCPRRQLPY PNKLLRCNRT VEIRRSSKSK TTTFQSLTFS  600
CSIPNIHGRG FIEIEDDSLS SSFFPFIVAE EDVCSEIRTL ETDIDDSKLE ARNQALEFIH  660
EMGWLLHRSQ LKSRLSSSMD PNSDLFSFDR FRWLIEFSVD HDWCRVVNKL LTLIFKGITV  720
INHTSVETAL LDIGLLHRAV RRNSRPMVEF LLNFRVPGPV LFKPDAVGPA GLTPLHIAAG  780
KDGSEDVLDA LTNDPQMVGV EAWRRSHDSS GLTPYDYASL RGHYPYIHLV QRKMNKNKGH  840
VVVDIPVKTK VKEGAELSLS FKGFEMEKAL VFKGRCNECE GKLGYYGGVR SSLAIYKPAM  900
LSMVAIAAVC VCVALLFKSS PQVMFVFQPF IWERLKYGAS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	6e-32	142	221	5	84	squamosa promoter binding protein-like 4
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023764294.1	0.0	squamosa promoter-binding-like protein 1 isoform X1
TrEMBL	A0A2J6LCN6	0.0	A0A2J6LCN6_LACSA; Uncharacterized protein
STRING	XP_002519316.1	0.0	(Ricinus communis)
STRING	XP_004297083.1	0.0	(Fragaria vesca)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47070.1	0.0	squamosa promoter binding protein-like 1