PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa006953
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family bHLH
Protein Properties Length: 314aa    MW: 35204.1 Da    PI: 7.5007
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58680217PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.35.5e-084188354
               HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
        HLH  3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                 +  rE+ RRdr+N+ f eL + l ++     +K +Ka+iL  +++ +++L
  Lsa006953 41 LQKADREKLRRDRLNEQFTELGKTLDPD----RPKFDKATILCDTIQMLNDL 88
               56778********************997....79************999887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.103.5E-1237111IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.79E-1337107IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.93E-63793No hitNo description
PROSITE profilePS5088812.5893888IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.1E-64188IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.9E-54494IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MDNRLPPNSE KFHLAPPDNR PPPNQLNAEL RPGFEHKDRK LQKADREKLR RDRLNEQFTE  60
LGKTLDPDRP KFDKATILCD TIQMLNDLTA QVSRLKSEYT TLTEESRELT QEKHDLREEK  120
ASLKSDIENL NLQYQQRVRA SSSIYPWGGH MDQSVVMQPH PHPHPPTYPY PIPMQMPMPP  180
MHHPPIQPYP FFGNQNPSNP CSTFFQYVSP PPVHQPSSRS HVSTRQPSKN KSSSGKNEDS  240
NDVATELELK MPGSTLDQEG SGGESKLKKS HRKENSISDE SSLSPSGWAA SHTVQASSSN  300
SVVGGLNGNG GGHP
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023731461.10.0transcription factor bHLH121-like
SwissprotQ9LT238e-70BH121_ARATH; Transcription factor bHLH121
TrEMBLA0A2J6KKU61e-176A0A2J6KKU6_LACSA; Uncharacterized protein
STRINGEOX977581e-100(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19860.14e-66bHLH family protein
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  2. Min JH, et al.
    Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element.
    Front Plant Sci, 2017. 8: p. 2100
    [PMID:29321786]