PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa007048

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

MYB

Protein Properties

Length: 213aa MW: 24733.3 Da PI: 9.7356

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Lsa#S32125149	PU_ref	Unigene	View CDS
PUT-187a-Lactuca_sativa-38650	PU_unref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	38.6	2.5e-12	8	53	2	48
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 g WT Ede+l+ av ++G++ W++ ++ + ++++ qck rw+ +l Lsa007048 8 GVWTNTEDEILKSAVMKYGKNEWSRTSSLLV-RKSATQCKARWYEWL 53 78***************************.**********986 PP
2	Myb_DNA-binding	36.4	1.2e-11	61	103	3	48
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 WT eEde+l+++ k+l++ Wkt+a ++g Rt +c++r+ k+l Lsa007048 61 EWTREEDEKLLHLAKLLPSQ-WKTVAPMVG--RTSCECIDRYEKLL 103 7*****************.****8..********9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	19.554	2	57	IPR017930	Myb domain
SuperFamily	SSF46689	1.2E-9	3	50	IPR009057	Homeodomain-like
SMART	SM00717	5.0E-12	6	55	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.2E-16	9	61	IPR009057	Homeodomain-like
Pfam	PF13921	4.3E-13	10	70	No hit	No description
CDD	cd00167	2.67E-10	10	53	No hit	No description
SuperFamily	SSF46689	2.21E-17	36	105	IPR009057	Homeodomain-like
CDD	cd11659	1.59E-25	55	106	No hit	No description
SMART	SM00717	1.7E-9	58	105	IPR001005	SANT/Myb domain
PROSITE profile	PS51294	9.981	60	107	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	6.8E-11	62	104	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 213 aa Download sequence Send to blast
MRISIKGGVW TNTEDEILKS AVMKYGKNEW SRTSSLLVRK SATQCKARWY EWLDPSIEMS 60 EWTREEDEKL LHLAKLLPSQ WKTVAPMVGR TSCECIDRYE KLLDTACVRD DDPRKLRPGE 120 IDPNPEAKPA RPDPVDMDDD EKEMLSEARA RLLNTRGKKA KRKAREKQLE ETSRLASLHI 180 AKMGLPALRD QFSQGTAFNW YQRRVKKKTY GSF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5mqf_L	1e-86	2	179	3	186	Cell division cycle 5-like protein
5xjc_L	1e-86	2	179	3	186	Cell division cycle 5-like protein
5yzg_L	1e-86	2	179	3	186	Cell division cycle 5-like protein
5z56_L	1e-86	2	179	3	186	Cell division cycle 5-like protein
5z57_L	1e-86	2	179	3	186	Cell division cycle 5-like protein
5z58_L	1e-86	2	179	3	186	Cell division cycle 5-like protein
6ff4_L	1e-86	2	179	3	186	Cell division cycle 5-like protein
6ff7_L	1e-86	2	179	3	186	Cell division cycle 5-like protein
6icz_L	1e-86	2	179	3	186	Cell division cycle 5-like protein
6id0_L	1e-86	2	179	3	186	Cell division cycle 5-like protein
6id1_L	1e-86	2	179	3	186	Cell division cycle 5-like protein
6qdv_O	1e-86	2	179	3	186	Cell division cycle 5-like protein
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Functional Description ? help Back to Top
Source	Description
UniProt	Component of the MAC complex that probably regulates defense responses through transcriptional control and thereby is essential for plant innate immunity. Possesses a sequence specific DNA sequence 'CTCAGCG' binding activity. Involved in mRNA splicing and cell cycle control. May also play a role in the response to DNA damage. {ECO:0000250\|UniProtKB:Q99459, ECO:0000269\|PubMed:17298883, ECO:0000269\|PubMed:17575050, ECO:0000269\|PubMed:8917598}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023761776.1	1e-155	cell division cycle 5-like protein isoform X2
Swissprot	P92948	5e-96	CDC5L_ARATH; Cell division cycle 5-like protein
TrEMBL	A0A2J6LIH7	1e-139	A0A2J6LIH7_LACSA; Uncharacterized protein
STRING	XP_005648666.1	2e-98	(Coccomyxa subellipsoidea)
STRING	XP_006398166.1	1e-98	(Eutrema salsugineum)

Publications ? help Back to Top
Heyndrickx KS,Vandepoele K Systematic identification of functional plant modules through the integration of complementary data sources. Plant Physiol., 2012. 159(3): p. 884-901 [PMID:22589469] Li S, et al. MAC3A and MAC3B, Two Core Subunits of the MOS4-Associated Complex, Positively Influence miRNA Biogenesis. Plant Cell, 2018. 30(2): p. 481-494 [PMID:29437988]