PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa007052

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

NAC

Protein Properties

Length: 339aa MW: 38232.5 Da PI: 6.9503

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Lsa#S58685439	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	174.4	3.3e-54	16	142	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelv 100 +ppGfrFhPtdeel+++yL +kv ++++ + ++i evd++++ePw+Lp+++k +ekewyfF+ rdkky+tg r+nrat++gyWkatgkdke+++ ++ lv Lsa007052 16 MPPGFRFHPTDEELITHYLSNKVVDSTFFA-KAIGEVDMNRIEPWELPTMAKMGEKEWYFFCFRDKKYPTGLRTNRATAAGYWKATGKDKEIYR-GRLLV 113 79***********************888.88***********988999************************************.999 PP NAM 101 glkktLvfykgrapkgektdWvmheyrle 129 g+kktLvfy grapkgekt+Wv+heyrle Lsa007052 114 GMKKTLVFYMGRAPKGEKTNWVIHEYRLE 142 ***************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.88E-62	13	166	IPR003441	NAC domain
PROSITE profile	PS51005	58.252	16	166	IPR003441	NAC domain
Pfam	PF02365	2.7E-28	17	141	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 339 aa Download sequence Send to blast
MEKLCDPAQE DDQMDMPPGF RFHPTDEELI THYLSNKVVD STFFAKAIGE VDMNRIEPWE 60 LPTMAKMGEK EWYFFCFRDK KYPTGLRTNR ATAAGYWKAT GKDKEIYRGR LLVGMKKTLV 120 FYMGRAPKGE KTNWVIHEYR LEGKFSLQNL PKAAKNEWVI CRVFHKTSGG KKVPFSGLMR 180 MDSGGVTRSL PPLMDSPAAF GGRNINPSTS DSLHVPCFSN QVDIQTTQKN MINSFINTSI 240 FPFDSSSIPL LEGQSDPLMH QFPSVSSFPV HDQAILRGLI ETYSHGLKIE RDIFTGSQET 300 GVSFGKNISN LEKGNIGIED QETPSTSVGP IDLDGFWNY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	4e-53	9	172	7	171	NO APICAL MERISTEM PROTEIN
1ut4_B	4e-53	9	172	7	171	NO APICAL MERISTEM PROTEIN
1ut7_A	4e-53	9	172	7	171	NO APICAL MERISTEM PROTEIN
1ut7_B	4e-53	9	172	7	171	NO APICAL MERISTEM PROTEIN
3swm_A	4e-53	9	172	10	174	NAC domain-containing protein 19
3swm_B	4e-53	9	172	10	174	NAC domain-containing protein 19
3swm_C	4e-53	9	172	10	174	NAC domain-containing protein 19
3swm_D	4e-53	9	172	10	174	NAC domain-containing protein 19
3swp_A	4e-53	9	172	10	174	NAC domain-containing protein 19
3swp_B	4e-53	9	172	10	174	NAC domain-containing protein 19
3swp_C	4e-53	9	172	10	174	NAC domain-containing protein 19
3swp_D	4e-53	9	172	10	174	NAC domain-containing protein 19
4dul_A	4e-53	9	172	7	171	NAC domain-containing protein 19
4dul_B	4e-53	9	172	7	171	NAC domain-containing protein 19
Search in ModeBase

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed post-transcriptionally by miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808, ECO:0000269\|PubMed:18305205, ECO:0000305\|PubMed:15723790}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023730024.1	0.0	NAC domain-containing protein 79-like
Swissprot	Q9FLR3	1e-130	NAC79_ARATH; NAC domain-containing protein 79
TrEMBL	A0A2J6KNX1	0.0	A0A2J6KNX1_LACSA; Uncharacterized protein
STRING	VIT_17s0000g06400.t01	1e-140	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G07680.1	1e-133	NAC domain containing protein 80

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Vidal EA,Álvarez JM,Gutiérrez RA Nitrate regulation of AFB3 and NAC4 gene expression in Arabidopsis roots depends on NRT1.1 nitrate transport function. Plant Signal Behav, 2014. 9(3): p. e28501 [PMID:24642706] Lee MH,Jeon HS,Kim HG,Park OK An Arabidopsis NAC transcription factor NAC4 promotes pathogen-induced cell death under negative regulation by microRNA164. New Phytol., 2017. 214(1): p. 343-360 [PMID:28032643]