PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa007154
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family E2F/DP
Protein Properties Length: 731aa    MW: 80678.7 Da    PI: 8.3342
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58695320PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP85.44.3e-27157222171
    E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 
                r+++sL+llt+kf++l++++e+gi++ln++a++L   +v  ++RRiYDi+NVLe+++liekk kn+irwkg
  Lsa007154 157 RYDSSLGLLTKKFINLIKHAEDGILDLNNAADTL---EV--QKRRIYDITNVLEGIGLIEKKLKNRIRWKG 222
                6899******************************...99..****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.109.1E-29155224IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013723.2E-34157222IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467851.22E-16157220IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF023194.5E-24159222IPR003316E2F/DP family, winged-helix DNA-binding domain
CDDcd146609.06E-46233339No hitNo description
SuperFamilySSF1440748.63E-32234339No hitNo description
PfamPF164213.6E-32238337IPR032198E2F transcription factor, CC-MB domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005667Cellular Componenttranscription factor complex
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 731 aa     Download sequence    Send to blast
MSEARAANRQ AAQPPSQASI AGGGGGGGQI LHPMRRHLPF SSTRPPFIPS DDYHRFSSPN  60
NGNRVATTAD QETEVLIVKS PPVKRKLGTD YNGVPSNEWT NLGYAATTNS PLHTPVSAKG  120
TRINARSKVT KNTKSAPQTP VSNTGSPAPL TPVGSCRYDS SLGLLTKKFI NLIKHAEDGI  180
LDLNNAADTL EVQKRRIYDI TNVLEGIGLI EKKLKNRIRW KGLDSSKPGE LEDDVALLQA  240
EVQKLSMEEH KLDESIREMQ ERMSDLSEDN TNQKWLFVTE DDIKGLPCFQ NETLIAIKAP  300
HGTTLEVPDP DEAVDYPQRR YRIILRSTMG PIDVYLVSQF EEKFEDIEQA GAPLASNSGS  360
DDNPTTEMTI DPHPQNVHGN TMNINTDNNN NNNSNNNNNK AIPVNILLLD NCTSPSAPSI  420
IDLGEKIIHP VKIRTTSGPL FIEVVHAQIA FSGKSXDVTR MHTATMSKER KQKMTVDHHN  480
QRKNPSTSGL YSELDQLLHI HSLHGVHELI YRLRSYEFVH GISVVSELAI PDDSVRLNLS  540
EKRDTGENPT PGSAVENGGE EGGDSLSRSR IEVGEFEXMG TWMTATVNTM AGVSMLFRRV  600
NRLNRQRSEL FRSVCKKADL PLTILAVFAG FSTIARRMKP TLKNPMSKLT AVSSATTSPA  660
KIRTNNTRII EPTGTPPASL FTRVSEGAVS PVMRSATSTL PNLELVHPKF FRRIGIRIII  720
LTRIGREEFL E
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_A2e-24149223274PROTEIN (TRANSCRIPTION FACTOR E2F-4)
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023735359.10.0transcription factor E2FA-like isoform X1
TrEMBLA0A2J6KC200.0A0A2J6KC20_LACSA; Uncharacterized protein
STRINGVIT_08s0007g02510.t011e-179(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36010.11e-141E2F transcription factor 3